Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03212 ATGGCAATGGAGAATGATGAAGTGAGATTGAGAAAAAGAAGAAGAAGAGTGTGTGAAGAAGAAGGTGAGCTCCAAGAAGCAAGGTATATCAAGAAGAAGAAGAAGCAGCCGCAGCCGCAGCAGCACGAACATTCTAATGTGATCACTACTAAGAGAAGTTCAAAATTTCGTGGGGTTAGCAGACATAGATGGACGGGTAGGTTTGAGGCTCATTTATGGGACAAGCTTTCTTGGAATGTAACTCAAAAAAAGAAAGGGAAGCAAGGTGCTTATGATGAAGAAGAATCTGCTGCCAGAGCATATGATTTAGCAGCACTTAAGTATTGGGGAACATCAACTTTTACTAATTTTCCGTTATCAGATTATGAGAAAGAGCTAGAAATAATGCAGACTATGACCAAAGAAGAGTACTTGGCAACTTTAAGGAGGAAGAGTAGTGGCTTCTCAAGAGGTGTATCAAAGTATAGGGGTGTTGCAAGGCATCATCAGAATGGAAGATGGGAAGCAAGGATAGGAAGAGTTTTTGGAAACAAATATCTTTACCTTGGAACCTACAGCACACAAGAGGAAGCAGCACGAGCCTATGACATAGCAGCAATTGAGTACAGAGGAATTAATGCTGTCACCAACTTTGATTTAAGTAATTACATTACATGGTTGAAGCCTTCACACCAAAACTCCCAAGACCCTAAACCTGAAACAGAAGTAGTACTAAACTCTCAAGCACTCACTTCTCCATCCAACTATGCTCCAAATCCAATACAACATTCAAAACCATTGCCCTTTGACAATACCTCTTTCATCAGTCTTGATCACCTGAATTACCCTGAAAATCAAGAAGTCTTTGATAACAAAATGTATCGATTTTCGAGCAGCAAGTCGTCTTCTCCCACGGCTCTTGGCCTTCTCTTTCGCTCTTCGCTGTTTAGGGAATTGGTTGAAAAGAACTCAAACAATGCATGTGGAGATGAACTTGATGAGGAAGTCACAAAAGATCAACAACAAAACGTAGCCAGTGATGATGAACTGGGTGGGATCTTCTGTGATGGCAGTGACAGCATTTCATTTTTCTATGATCCAAACACAAGCGGCTTAGAACTGCAAGAAAGCGATCTCTACTCAATTCTTTGA 1131 0.4085 MAMENDEVRLRKRRRRVCEEEGELQEARYIKKKKKQPQPQQHEHSNVITTKRSSKFRGVSRHRWTGRFEAHLWDKLSWNVTQKKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFPLSDYEKELEIMQTMTKEEYLATLRRKSSGFSRGVSKYRGVARHHQNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSNYITWLKPSHQNSQDPKPETEVVLNSQALTSPSNYAPNPIQHSKPLPFDNTSFISLDHLNYPENQEVFDNKMYRFSSSKSSSPTALGLLFRSSLFRELVEKNSNNACGDELDEEVTKDQQQNVASDDELGGIFCDGSDSISFFYDPNTSGLELQESDLYSIL 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03212 376 ProSiteProfiles AP2/ERF domain profile. 55 118 IPR001471 GO:0003700|GO:0006355
Aip04g03212 376 ProSiteProfiles AP2/ERF domain profile. 154 212 IPR001471 GO:0003700|GO:0006355
Aip04g03212 376 MobiDBLite consensus disorder prediction 29 48 - -
Aip04g03212 376 Gene3D AP2/ERF domain 54 120 IPR036955 GO:0003700|GO:0006355
Aip04g03212 376 Gene3D AP2/ERF domain 153 214 IPR036955 GO:0003700|GO:0006355
Aip04g03212 376 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Aip04g03212 376 PRINTS Ethylene responsive element binding protein signature 194 214 IPR001471 GO:0003700|GO:0006355
Aip04g03212 376 SUPERFAMILY DNA-binding domain 153 214 IPR016177 GO:0003677
Aip04g03212 376 SUPERFAMILY DNA-binding domain 54 120 IPR016177 GO:0003677
Aip04g03212 376 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 10 365 - -
Aip04g03212 376 CDD AP2 54 120 IPR001471 GO:0003700|GO:0006355
Aip04g03212 376 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 10 365 - -
Aip04g03212 376 CDD AP2 153 214 IPR001471 GO:0003700|GO:0006355
Aip04g03212 376 Pfam AP2 domain 153 204 IPR001471 GO:0003700|GO:0006355
Aip04g03212 376 Pfam AP2 domain 54 110 IPR001471 GO:0003700|GO:0006355
Aip04g03212 376 SMART rav1_2 55 124 IPR001471 GO:0003700|GO:0006355
Aip04g03212 376 SMART rav1_2 154 218 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03212 Aip-Chr4 126180114 126182234 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03212 25 216 AP2-EREBP Transcription Factor Family AT5G57390 62.564 4.05e-82 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Aip04g03212 AP2 9.2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03212 - - gmx:100779867 486.493