Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03192 ATGGGTGAGAAAGATATTGGTAATGAAGATGTGGGGTTGAGTTTGAGTTTGAGTTTGGGAAGAGGATGTTCTTCATCTCCGCCACCTTTGAAGCCACAAAGATCGGTTCCTATGAATAACATCAACGAGAAGAGTTCATGGAATGAGTTGTTTCAGTTATTACCACAAGATAGGAGCACAGATATGAGGCCGTTATTTGGTGGAGGAATCAACATGAATTCGATGCCGTCAATGGCGGAGACTCCGCCGGATTGCAACCAGGACAACCATGATTCATCGCCAAACAACAGTAGTTTATCAAGTGGCAGTGGCTGCAAGCGAAGCGAGAGAGAAGAGGACAATGGCACGGCGGTTGCCGGCATCGAATTGGTGTCGTGCTCGCGGGGAAGTGATGACGAGGATGGCGGCGGCGGAGAGGCGGCGAGGAAGAAGCTGAGGCTGACGAAGGAGCAGTCAATGTTATTGGAAGAAACGTTCAAGCAGCATAACACGCTGAACCCGAAACAAAAGCAGACATTGGCAAAGGAATTGAATCTGAGAGCCAGACAGGTGGAGGTGTGGTTCCAGAATAGGAGAGCAAGGACCAAGTTGAAGCAAACCGAAGTGGATTGTGAATACTTGAAGAGATATTGTGAGAATCTAAGTGAAGAGAATAGGAGGTTGCAAAAAGAAGTGCAAGAGCTTAGGACATTGAAGCTATCTCCACAGCTCTACATGCATATGAACCCTCCAACAACTCTTACAATGTGTCCTTCTTGCGAGCGTGTCGCCGTCTCATCCGCCTCGTCCTCTAACTCTGCCGCCGCCTCCACCACTCACGTGCCGGCACTACAAAGTAATTGCAACAACTCGTTGGGTCCACACATCCAGCGGCCGGTGCGCGTCAACACTTGGCCATTTGACAGCCCAATTTCGCGGCCGTAG 924 0.4968 MGEKDIGNEDVGLSLSLSLGRGCSSSPPPLKPQRSVPMNNINEKSSWNELFQLLPQDRSTDMRPLFGGGINMNSMPSMAETPPDCNQDNHDSSPNNSSLSSGSGCKRSEREEDNGTAVAGIELVSCSRGSDDEDGGGGEAARKKLRLTKEQSMLLEETFKQHNTLNPKQKQTLAKELNLRARQVEVWFQNRRARTKLKQTEVDCEYLKRYCENLSEENRRLQKEVQELRTLKLSPQLYMHMNPPTTLTMCPSCERVAVSSASSSNSAAASTTHVPALQSNCNNSLGPHIQRPVRVNTWPFDSPISRP 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03192 307 Gene3D - 136 203 - -
Aip04g03192 307 PANTHER - 9 298 - -
Aip04g03192 307 CDD homeodomain 142 199 IPR001356 GO:0003677
Aip04g03192 307 ProSitePatterns 'Homeobox' domain signature. 173 196 IPR017970 GO:0000981|GO:0006355
Aip04g03192 307 Pfam HD-ZIP protein N terminus 8 111 IPR006712 GO:0005634
Aip04g03192 307 ProSiteProfiles 'Homeobox' domain profile. 138 198 IPR001356 GO:0003677
Aip04g03192 307 SMART halz 198 241 IPR003106 GO:0006355|GO:0043565
Aip04g03192 307 MobiDBLite consensus disorder prediction 74 104 - -
Aip04g03192 307 SMART HOX_1 140 202 IPR001356 GO:0003677
Aip04g03192 307 Coils Coil 204 234 - -
Aip04g03192 307 Pfam Homeobox associated leucine zipper 198 231 IPR003106 GO:0006355|GO:0043565
Aip04g03192 307 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 9 298 - -
Aip04g03192 307 MobiDBLite consensus disorder prediction 16 43 - -
Aip04g03192 307 SUPERFAMILY Homeodomain-like 130 199 IPR009057 -
Aip04g03192 307 Pfam Homeodomain 142 196 IPR001356 GO:0003677
Aip04g03192 307 MobiDBLite consensus disorder prediction 59 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03192 Aip-Chr4 125866922 125869536 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03192 6 298 Homeobox Transcription Factor Family AT5G47370 51.667 2.60e-84 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aip04g03192 HD-ZIP_N 1.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03192 K09338 - gmx:100819624 293.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g03192 04 125866922 125869536 Aip04g03192 04 125866922 125869536 ECH
Aip02g00574 02 8583456 8586846 Aip04g03192 04 125866922 125869536 PCT