Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03180 ATGAGTCGAAGAGTGAGGAGGAAGGTGGCAAGGAAAAGCAAAGGGAATGATGTTGTAGCTTCAAGTTGTCCTGAGATTCGAGATGAGGTTTTGGATTTGGAACTGCCAGGGACGGTTGATTGGAGGAGCTTACCTGATGATACAGTGATTCAGCTGTTGTCATGTCTGAGTTATAGGGACCGTGCTAGCTTATCGTCGACTTGTAGGACATGGAGGACTCTTGGCAGCTCGCAGTGTTTGTGGAACACGTTGGATCTTCGTTCCCACAGGTTTGATGCTAATATGGCATCTTCACTTGCTCCGAGGTGTGTGCATCTTCAGAAGCTAAGGTTTCGTGGGGCAGAGTCTGCTGATGCCATAATCCATCTTCGAGCTAGGAACTTGTGTGAGTTAAGTGGTGACTATTGCAGGAAAATTACTGATGCAACTCTTTCGGTGATTGCTGCCCGGCATGAGTTACTTGAGAGTCTTCAGCTTGGACCTGATTTCTGCGAGAGAATAAGTAGTGATGCTATTAAGGCAATAGCTCATTGCTGTCCTAGACTTAGTAAACTTAGGCTTTCAGGTATCAGAGATGTAAATGCAGATGCTATTAATGCATTGGCTAAGCATTGTCCAAAGTTGACTGATATTGGGTTCATTGATTGTTTGAATGTTGATGAGCTTGCATTGGGGAATGTGATGTCGGTTCATTTCCTTTCTGTTGCGGGCACATCAAGTATGAAGTGGGGTGTTGTTTCCCATCTTTGGCATAAGCTTCCTAACCTGATTGGATTAGATGTTTCGAGAACTGATATTAGTCCATCTGCTGTTGCAAGGTTGTTATCCTTATCGCATAGCTTGAGGGTTTTGTGTGCTTTGAATTGTCCAATCCTCGAAGAAGACACTAGCTTCTCCGCTAGTAAATATAAAAACAAGTTATTAATTTCCCTTTTTACCAATATTTTTGAAGGACTAGCTTCTTTATTTTTTGATAGTACAAAGAAAGGAAAGAATGTCTTTTTGGACTGGAGGAGTTCGAAGAATAATGATAAGGACCTTAATGAAATTATACCTTGGCTTGAATGGATGCTGTCCCATACACTACTGAGATCTGCTGAGAGCCCTCAACAGGGTCTTGATAATTTCTGGGTTGAACAAGGCGGAGCACTCTTACTTAGTCTAATGCAGAGTTCTCAAGAGGATGTTCAAGAGAGGGCAGCTACGGGCCTTGCAACTTTTGTCGTGATTGATGATGAAAATGCTAGCATAGATTGTGGAAGGGCTGAAGCAGTTATGCGAGATGGTGGCATAAGGCTCCTTCTTGGCTTAGCAAAATCTTGGAGGGAAGGGCTTCAATCTGAGGCAGCTAAGGCAATTGCAAATTTGTCTGTCAATGCCAATGTGGCCAAAGCTGTTGCTGAAGAGGGTGGGATTGAGATTCTCGCTGGTTTGGCTAGGTCAATGAACAAGCTGGTGGCTGAAGAGGCTGCTGGAGGGTTGTGGAATCTCTCTGTAGGAGAAGAGCACAAGGGTGCCATTGCGGAAGCAGGTGGAATAAAAGCTTTAGTGGATCTTATATTCAAATGGTCCTCTAGTGGAGATGGAGTTTTGGAACGTGCAGCCGGTGCATTGGCTAATTTAGCGGCTGATGACAAGTGTAGTACAGAGGTTGCATTGGCAGGTGGTGTGCATGCTTTAGTGATGCTTGCTCGTAACTGCAAATTTGAGGGCGTGCAAGAGCAGGCTGCTCGTGCATTGGCTAATTTAGCTGCTCATGGAGATAGCAATAGTAACAATGCTGCTGTTGGACAAGAAGCAGGTGCTCTTGAGGCACTTGTTCAACTTACACGATCTCCACATGAGGGCGTCAGGCAAGAAGCTGCTGGTGCCCTTTGGAATTTGTCATTTGATGATAGAAACAGGGAAGCCATCGCAGCAGCTGGTGGAGTTCAGGCTTTGGTTGCTCTTGCGCAATCTTGTTCTAATGCCTCTCCTGGACTTCAAGAAAGGGCTGCTGGTGCTCTCTGGGGATTATCAGTCTCCGAGGCCAATAGCATTGCCATTGGACGTGAAGGTGGTGTTGCACCTTTGATTGCTCTTGCAAGGTCTGAAGCAGAGGATGTTCATGAAACTGCCGCAGGAGCACTGTGGAATCTTGCTTTCAACCCTGGTAATGCTTTACGAATAGTAGAGGAAGGAGGAGTTTCTGCACTTGTGGATCTGTGTTCTTCATCAGTTTCGAAGATGGCACGGTTCATGGCTGCCTTGGCATTGGCTTACATGTTCGATGGAAGAATGGATGAGTTTGCTTTAGTAGGCACGGGTTCGGAAGGTATTTCTAAGAGCGTGAGCTTGGATGGGGCAAGAAGGATGGCCTTAAAAAACATTGAAACCTTTGTCCTTATGTTTTCGGATCCACAAGCATTCACAGCTGCTGCAGCATCATCGGCTCCCGCAGCATTATCCCAGGTTACTGAAGGCGCTCGAATACAGGAAGCAGGACATCTGAGATGCAGTGGTGCTGAAATCGGAAGATTTGTCACCATGCTGCGGAATCCATCATCTATACTCAAGACTTGTGCAGCATTTGCTCTTCTCCAGTTTACAATTCCTGGGGGAAGACACGCCATTCACCATGCCAGCCTCATGCAGAATGCAGGAGCAGCAAGAGTTCTTCGTGGCGCGGCTGCTGCTGCCACAGCTCCACTCGAAGCGAAAATCTTTGCCAGAATAGTTCTTCGCAACCTTGAGTATCACCAAATTGAGCATACAGCGTAG 2760 0.4612 MSRRVRRKVARKSKGNDVVASSCPEIRDEVLDLELPGTVDWRSLPDDTVIQLLSCLSYRDRASLSSTCRTWRTLGSSQCLWNTLDLRSHRFDANMASSLAPRCVHLQKLRFRGAESADAIIHLRARNLCELSGDYCRKITDATLSVIAARHELLESLQLGPDFCERISSDAIKAIAHCCPRLSKLRLSGIRDVNADAINALAKHCPKLTDIGFIDCLNVDELALGNVMSVHFLSVAGTSSMKWGVVSHLWHKLPNLIGLDVSRTDISPSAVARLLSLSHSLRVLCALNCPILEEDTSFSASKYKNKLLISLFTNIFEGLASLFFDSTKKGKNVFLDWRSSKNNDKDLNEIIPWLEWMLSHTLLRSAESPQQGLDNFWVEQGGALLLSLMQSSQEDVQERAATGLATFVVIDDENASIDCGRAEAVMRDGGIRLLLGLAKSWREGLQSEAAKAIANLSVNANVAKAVAEEGGIEILAGLARSMNKLVAEEAAGGLWNLSVGEEHKGAIAEAGGIKALVDLIFKWSSSGDGVLERAAGALANLAADDKCSTEVALAGGVHALVMLARNCKFEGVQEQAARALANLAAHGDSNSNNAAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVQALVALAQSCSNASPGLQERAAGALWGLSVSEANSIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVSALVDLCSSSVSKMARFMAALALAYMFDGRMDEFALVGTGSEGISKSVSLDGARRMALKNIETFVLMFSDPQAFTAAAASSAPAALSQVTEGARIQEAGHLRCSGAEIGRFVTMLRNPSSILKTCAAFALLQFTIPGGRHAIHHASLMQNAGAARVLRGAAAAATAPLEAKIFARIVLRNLEYHQIEHTA 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03180 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 470 512 IPR000225 GO:0005515
Aip04g03180 919 SMART fbox_2 44 84 IPR001810 GO:0005515
Aip04g03180 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 642 687 IPR000225 GO:0005515
Aip04g03180 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 601 643 IPR000225 GO:0005515
Aip04g03180 919 SMART arm_5 418 458 IPR000225 GO:0005515
Aip04g03180 919 SMART arm_5 500 543 IPR000225 GO:0005515
Aip04g03180 919 SMART arm_5 544 585 IPR000225 GO:0005515
Aip04g03180 919 SMART arm_5 590 630 IPR000225 GO:0005515
Aip04g03180 919 SMART arm_5 716 757 IPR000225 GO:0005515
Aip04g03180 919 SMART arm_5 675 715 IPR000225 GO:0005515
Aip04g03180 919 SMART arm_5 459 499 IPR000225 GO:0005515
Aip04g03180 919 SMART arm_5 631 674 IPR000225 GO:0005515
Aip04g03180 919 Gene3D - 358 483 IPR011989 -
Aip04g03180 919 Gene3D - 570 677 IPR011989 -
Aip04g03180 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 555 586 IPR000225 GO:0005515
Aip04g03180 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 511 556 IPR000225 GO:0005515
Aip04g03180 919 SUPERFAMILY RNI-like 63 294 - -
Aip04g03180 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 429 471 IPR000225 GO:0005515
Aip04g03180 919 Gene3D - 678 761 IPR011989 -
Aip04g03180 919 Gene3D Ribonuclease Inhibitor 35 329 IPR032675 -
Aip04g03180 919 Pfam F-box-like 41 87 IPR001810 GO:0005515
Aip04g03180 919 SUPERFAMILY ARM repeat 362 745 IPR016024 -
Aip04g03180 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 686 728 IPR000225 GO:0005515
Aip04g03180 919 Pfam Armadillo/beta-catenin-like repeat 501 543 IPR000225 GO:0005515
Aip04g03180 919 Pfam Armadillo/beta-catenin-like repeat 423 457 IPR000225 GO:0005515
Aip04g03180 919 Pfam Armadillo/beta-catenin-like repeat 631 673 IPR000225 GO:0005515
Aip04g03180 919 Pfam Armadillo/beta-catenin-like repeat 677 714 IPR000225 GO:0005515
Aip04g03180 919 Pfam Armadillo/beta-catenin-like repeat 593 629 IPR000225 GO:0005515
Aip04g03180 919 Pfam Armadillo/beta-catenin-like repeat 464 498 IPR000225 GO:0005515
Aip04g03180 919 Pfam Armadillo/beta-catenin-like repeat 554 585 IPR000225 GO:0005515
Aip04g03180 919 Gene3D - 484 569 IPR011989 -
Aip04g03180 919 ProSiteProfiles F-box domain profile. 38 84 IPR001810 GO:0005515
Aip04g03180 919 PANTHER PROTEIN ARABIDILLO 1 1 905 IPR044583 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03180 572 759 U-box Gene Family AT2G23140 35.979 4.84e-20 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03180 - - ccaj:109792060 1565.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g03180 04 125671149 125680747 Aip04g03180 04 125671149 125680747 ECH