Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03173 ATGGAACTTGAAGCAATTATAAGGGAACAAGTTGATCTGGAGAACATACCCATAGAGGAAGTCTTTGAAAATCTAAAATGCACAAAAGAAGGACTAACCTCTGATCAAGTGAAAGAGAGGCTAGATTTGTTTGGACACAACAAGCTTGAAGAAAAGAAGGAAAGTAAAATACTCAAGTTTTTGGGGTTTATGTGGAATCCACTGTCATGGGTCATGGAAGCTGCTGCTATCATGGCCATTGCCATGGCTCATGGAGGGGGAGAAGGTTGGGATTATCAAGATTTTACGGGCATTGTTATACTGCTACTTGTAAACTCCACAATCAGTTTCATAGAAGAAAACAATGCTGGTAATGCAGCAGCAGCACTCATGGCAAGATTGGCCCCAAAAGCAAAGGTACTCCGTGATGGAAAATGGAGCGAAGAAGATGCATCGGTGTTGGTTCCTGGAGACATAATCAGCATCAAGCTAGGTGACATCATTCCTGCCGACGCACGCCTCCTTGAAGGAGATCCTTTGAAGATCGATCAGTCTGCTCTTACTGGAGAGTCACTTCCTGTTTCAAAACATCCTGGAGATGGAGTATATTCTGGTTCAACATGCAAGCAAGGAGAAATTGAAGCAGTAGTTATTGCAACTGGAGTTCACACATTCTTCGGAAAGGCGGCGCATCTTGTGGAAAACACCACACATGTTGGACATTTCCAGAAGGTTTTGCAATCTATTGGGAACTTCTGCATCTGTTCCATTGCTACTGGAATGCTCATTGAAATCATAGTGATATATGGCCCGCAGCAAAGGAAATACCGAGTTGGTATCGATAACCTCCTTGTGTTACTGATTGGCGGTATCCCTATTGCGATGCCAACTGTCCTTTCAGTTACAATGGCTATTGGTTCACACAAATTGTCTCAGCAGGGTGCTATAACAAAGAGAATGACTGCAATTGAAGAAATGGCCGGAATGGATGTTCTATGCAGTGATAAAACAGGCACATTAACTCTCAACAAGCTTACAGTGGACAAGAATCTAATTGAGGTCTTTGCTGATGGAGTTAATCAGGACATGGTTATACTTATGGCTGCAAGGGCATCAAGGCTAGAGAACCAAGATGCAATTGATTGTGCAATTGTATCTATGTTAGCAGACCCAAAGGAGGCACGAGCTGGAATAACTGAAATTCACTTCCTTCCATTCAATCCAACAGATAAAAGAACTGCACTTACATACACCGATGCTGCTGGCAAGATGCACAGGGTTAGCAAAGGTGCACCAGAGCAGATTCTCAACCTTGCACACAAGAAGTCGGAAATTGCACATAGGGTACATGCAATTATTGACAAATTTGCCGAACGTGGCCTTCGCTCGCTGGCTGTTGCCCGCCAGGAAGTACCTGAGGGAACCAAAGAAAGTTTAGGGGGTCCGTGGGAATTTGTCGGCCTACTCCCACTATTTGATCCTCCCCGCCACGATAGCGCTGAAACGATCAGAAGAGCTCTTAATCTTGGTGTGAGTGTCAAAATGATCACTGGTGATCAGCTTGCAATTGCTAAGGAAACAGGAAGGCGTCTTGGAATGGGCTCTAACATGTATCCTTCTTCGTCACTGCTAGGAGAAAGCAAAGATAATTTTGCTTCTGTTCCTGTCGATGATCTTATAGAGAATGCAGATGGTTTTGCTGGTGTCTTTCCTGGTAAGTATAATAGCAATCACAGGAAAGCTCTAATCCAAATTCTTGTCTATTTTCTGATTATATATGTTCCCTCAGAGCACAAATATGAGATTGTAAAGAGGTTACAAGCTAGAAAGCACATTTGTGGGATGACTGGTGATGGAGTGAATGATGCACCGGCTTTGAAGATAGCCGACATAGGTATCGCTGTAGCAGATGCCACAGACGCTGCAAGAAGTGCCTCTGACATAGTTCTAACAGAACCTGGGTTGAGTGTGATCATAAGTGCTGTTTTAACTAGCCGTGCAATTTTCCAAAGAATGAAAAACTACACAATATATGCTGTATCTATCACCATTCGTATTGTGGTTGGCTTTATGTTACTCACATGCATTTGGGAATTCAACTTTCCTCCCTTTATGGTTCTTGTCATAGCCATTCTCAACGATGGTACCATCATGACAATATCTAAAGATAGGGTTAAGCCTTCTCCAAGTCCTGATAGTTGGAAGCTGAGTGAGATTTTTGCAACTGGGATTGTCCTAGGAGGTTATCTGGCTCTAATGACAGTGATATTCTTCTGGGCAGCGTATAAAACACATTTTTTTCCTAACCAATTTGATGTGAGACATCTCCACGAAGATCTTCATGGTCCACCTACTCATGAAGAGAGTAAAATGCTAGGAGCTGCTATATATCTTCAAGTCAGTATAATTAGTCAAGCCTTAATTTTTGTGACTCGCTCAAGGGGATGGTCCTATACAGAAAGGCCCGGTGTTTTGCTTATGATCGCTTTTGTTATAGCTCAACTGATTGCAACTATTGTATCTGCCCTTCTCTCTTGGGAGCTAGCAGGAATCAAAGCCATAGGATGGGGTTGGACGGGAATCATTTGGGTCTACTCTATTATAACTTACTTATTTTTGGATCCTATAAAGTTTGCTGTTCGTTATGCATTAAGCGGAAGAGCTTGGAATTTGGTGGTAGACAAACATACTGCATTTATCAACAAAAATGACTTTGGTAGAGAAGCTCGTGAAGCTCAATGGGCTGCTGAGCAGAGAACCTTACATGGTCTCCAGTCTGCTGACATGAAAGTTGAGAAGCACACTTTCAGGGAAATAAATACACTAGCTGACGAGGCCAAGAGGCGTGCAGAAATAGCAAGGATGAGAGAGCTTCACACTCTGAAAGGAAGGGTGGAAACAATGGGCAAGCTAAAGGGTTTAGATGTGGATGCAATCAACAGTCATTACACAGTATAA 2937 0.428 MELEAIIREQVDLENIPIEEVFENLKCTKEGLTSDQVKERLDLFGHNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIAMAHGGGEGWDYQDFTGIVILLLVNSTISFIEENNAGNAAAALMARLAPKAKVLRDGKWSEEDASVLVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVSKHPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVENTTHVGHFQKVLQSIGNFCICSIATGMLIEIIVIYGPQQRKYRVGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHKLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFADGVNQDMVILMAARASRLENQDAIDCAIVSMLADPKEARAGITEIHFLPFNPTDKRTALTYTDAAGKMHRVSKGAPEQILNLAHKKSEIAHRVHAIIDKFAERGLRSLAVARQEVPEGTKESLGGPWEFVGLLPLFDPPRHDSAETIRRALNLGVSVKMITGDQLAIAKETGRRLGMGSNMYPSSSLLGESKDNFASVPVDDLIENADGFAGVFPGKYNSNHRKALIQILVYFLIIYVPSEHKYEIVKRLQARKHICGMTGDGVNDAPALKIADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVVGFMLLTCIWEFNFPPFMVLVIAILNDGTIMTISKDRVKPSPSPDSWKLSEIFATGIVLGGYLALMTVIFFWAAYKTHFFPNQFDVRHLHEDLHGPPTHEESKMLGAAIYLQVSIISQALIFVTRSRGWSYTERPGVLLMIAFVIAQLIATIVSALLSWELAGIKAIGWGWTGIIWVYSIITYLFLDPIKFAVRYALSGRAWNLVVDKHTAFINKNDFGREAREAQWAAEQRTLHGLQSADMKVEKHTFREINTLADEAKRRAEIARMRELHTLKGRVETMGKLKGLDVDAINSHYTV 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03173 978 Pfam Cation transporter/ATPase, N-terminus 15 78 IPR004014 -
Aip04g03173 978 Gene3D - 15 226 - -
Aip04g03173 978 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 98 344 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aip04g03173 978 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 589 689 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aip04g03173 978 PANTHER CALCIUM-TRANSPORTING ATPASE 3 958 - -
Aip04g03173 978 CDD P-type_ATPase_H 31 871 IPR006534 GO:0008553|GO:0016021|GO:0120029
Aip04g03173 978 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 31 566 IPR006534 GO:0008553|GO:0016021|GO:0120029
Aip04g03173 978 Gene3D - 927 978 - -
Aip04g03173 978 PRINTS H+-transporting ATPase (proton pump) signature 442 460 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aip04g03173 978 PRINTS H+-transporting ATPase (proton pump) signature 556 572 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aip04g03173 978 PRINTS H+-transporting ATPase (proton pump) signature 790 811 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aip04g03173 978 SUPERFAMILY Calcium ATPase, transmembrane domain M 11 877 IPR023298 -
Aip04g03173 978 PRINTS P-type cation-transporting ATPase superfamily signature 176 190 - -
Aip04g03173 978 PRINTS P-type cation-transporting ATPase superfamily signature 326 340 - -
Aip04g03173 978 PRINTS P-type cation-transporting ATPase superfamily signature 480 491 - -
Aip04g03173 978 PRINTS P-type cation-transporting ATPase superfamily signature 502 512 - -
Aip04g03173 978 PRINTS P-type cation-transporting ATPase superfamily signature 609 628 - -
Aip04g03173 978 PRINTS P-type cation-transporting ATPase superfamily signature 632 644 - -
Aip04g03173 978 PANTHER PLASMA MEMBRANE ATPASE 3 958 - -
Aip04g03173 978 SFLD Haloacid Dehalogenase 308 660 - -
Aip04g03173 978 Pfam haloacid dehalogenase-like hydrolase 322 623 - -
Aip04g03173 978 ProSitePatterns E1-E2 ATPases phosphorylation site. 328 334 IPR018303 -
Aip04g03173 978 Gene3D - 338 485 IPR023299 GO:0000166
Aip04g03173 978 SMART Cation_ATPase_N_a_2 12 84 IPR004014 -
Aip04g03173 978 SUPERFAMILY Calcium ATPase, transduction domain A 129 226 IPR008250 -
Aip04g03173 978 Gene3D - 63 134 - -
Aip04g03173 978 Gene3D - 570 876 - -
Aip04g03173 978 SFLD p-type atpase 308 660 IPR044492 -
Aip04g03173 978 Pfam E1-E2 ATPase 127 305 - -
Aip04g03173 978 SUPERFAMILY HAD-like 322 656 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03173 Aip-Chr4 125597311 125604634 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03173 3 978 Primary Pumps ATPases AT5G62670 76.915 0.0 1510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03173 K01535 - gmx:100794938 1580.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g03173 04 125597311 125604634 Aip04g03173 04 125597311 125604634 ECH