Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03170 ATGAATGCAAAGAAGCCATCAAGGGAAGAATCCATATTCTTAGCAAAGGCAGCACAAGCTGCAGAGAGATACAAGGATATGGTGGACTTCATGAAGACTCTAGTCCTTTCGATCACTCCAGCTGACGAGCTTACGGAGGAAGAAAGAAATCTTGTATCGTCAGCTTACAAGAACATGATCGGTCCTCTTCGCACGGGGTGGTGCATTGTTTCGGCAATCGAGAATAAAGAAAACAGCAGCGAAGACGAGAAGCGCGCTGACATGGCCAGGGCATATAAGTTGGATTTGGAGTCCAAGATGTCAGGCGTGTGCAATGATATTCTTGGACTCCTGGAGTCCAACTTGCTGCCCTCGGCCGCAGCTAGCCACTCTAGGGTTTTTTATTTGAAGATGAAAGGTGACTATATTAGATACTTGTTGAAGTTTGCGGTTGGCGATGATAGAAAGAGATCTGCTGATGCGGCCATGGAGGCTTATACGGCGGCTCAGGATATTGCTGTAGTGGATCTTCCGCCTTCTAGTCCAATAAGATTAGGTCTCATTCTCAACTTCTCAGTGTTCTGCCATGAAATCCTCAATGAGCCTGATAAAGCTTGTGACATGGCTAAACAGGGTATTGAAGAAGCAATTGCAGAAATAAAAACATTAGAAAAGCCGCCAAACAAAGATACCACTCTTATAATTCAACTCTTAAGAGATAATCTCTCCGGTTGGACCACTGAGGAGGAGGACTCAATGATTATTCGTTTGCCGGAACCAAAAGTAAAGATTTTGGTAGATAAAGATCCCATAAAAACTTCTTTCGAGGAATGGGTAAAATCCGGTCATTTCTCAAGAACAATGGCTAAGGGACCCGATACTACTACTTGGATTTGGAACCTACATGCTGATGCTCATGATTTCGATAGCTATACTAGTGATTTAGAGGAGATTTTTCGAAAAATATTTAGTGCCCATTTCGGCCAACTCTCCATCATCTTTCTTTGGCTTAGTGGCATGTATTTTCATGGTGCTCTTTTTTCAATTATGAAGTATGGGAATCTGGTGCATGTAGCTTGGCAGGAAAATTTTGAGACATGGGTACAGGATCATTTACATGTAAGACCTATTGCTCATGCAATTTGGGATCCTCATTTTGGTCAACCGGTTGTAGAAGTTTTTACTCGTGAGGGTGCTCTTGGTCCACGGGGTGGTTACACCTACAGCCAAAATGGAAACCGAGTGTTTCTTGCTTTAAAAATGCCGAATCCCATCTTAATCATCATCTCAGGATTATTCAGAGTCAGTTCCTTGGCTTCGACAGGACATTTAGTTCATGTCGCTATTCCAGGAGTTAGAGGGGAATACGTTCGATGGAATAATTTTTTAGGTGTATTGCCACATCCTCTAGGATTAGGTCCACTTTTTACAGGCCAGTGGAATCTTTATGCTCAAAATCCATATTCCAGTAGTCATTTATTTAGTACCCCTCAGAGAGCAGAAATTGCCATTCTAACACTTCTTGGGGGATTCCATCCACAAACGCAAAGCTTATGGATGACCGATATTGTGCACCATCATTTAGCTATTTCGATTCTTTTCCTGATAGCTGGTCACATGTATAGAACCAACTTCGGAATTGGCCACAGTATAAAAGAGATCTTAGAAGCACACATTCCTCCAGGGGGTAGATTAGGGCGTGGACATAAGGGTCTTTATGACACAATCAATAATTCACTTCATTTTCAATTAGGTCTTGCTTTAGCCTCTTTGGGAGTTATTTCTTCCTTGGTAGCTCAACACATGTACTCTTTACCTGCTTATGCGTTTATAGCGCAAGATTTTACTACTCAAGCGGTGTTATATATTCATCATCAATACATCACAGGATTCATTATGACAGGAGCTTTTGCTCATGGAGCTATATTTTTTATTAGAGATTACAATCCAGAACAACACGAGGATAATGTATTGGCAAGAATGTTAGACCACAAAGAAGCTATAATATCGCATTTAAGTTGGGACAGCCTGTTTCTGGGGTTCCATACTTTGGGACTTTATGTCTATAATGATGTCATGCTTGCTTTTGGCACTCCGAAAAAACAAATCTTGATCGAACCCATATTTGCGCAATGGATACAATCTACGCATAGTAAAACTTCATACGGCTTCGATGTACTATTATCTTCAACGAATAGCTCGGCGTTCAATGCGGGGCGAAGTATATGGTTGTCCGGTTGGTTAAATACTATAATTAAGAGTAGTAATTCTCTATTCTTAACAATTGGACCCGGAGATTTCTTAGTTCATCATGCTATTGCTCTAGGTTTACATACAACTACATTGATATTAGTAAAAGGTACTTTGGATGCATGTGGTTCCAAGTTAATGCCAGATAAAAAAGATTTTGGTTATAGTTTTCCTTGCGATGGTCCGGGACAAGGTGATTTTGGCTTGGGACGCATTTTATTTGGCAGTTTTTTAGATGTTAAATACGTTTGGCTGGGTTACTTTTTACTGGCATTGGAAACACATTATACTATAACAGGGTAA 2532 0.4076 MNAKKPSREESIFLAKAAQAAERYKDMVDFMKTLVLSITPADELTEEERNLVSSAYKNMIGPLRTGWCIVSAIENKENSSEDEKRADMARAYKLDLESKMSGVCNDILGLLESNLLPSAAASHSRVFYLKMKGDYIRYLLKFAVGDDRKRSADAAMEAYTAAQDIAVVDLPPSSPIRLGLILNFSVFCHEILNEPDKACDMAKQGIEEAIAEIKTLEKPPNKDTTLIIQLLRDNLSGWTTEEEDSMIIRLPEPKVKILVDKDPIKTSFEEWVKSGHFSRTMAKGPDTTTWIWNLHADAHDFDSYTSDLEEIFRKIFSAHFGQLSIIFLWLSGMYFHGALFSIMKYGNLVHVAWQENFETWVQDHLHVRPIAHAIWDPHFGQPVVEVFTREGALGPRGGYTYSQNGNRVFLALKMPNPILIIISGLFRVSSLASTGHLVHVAIPGVRGEYVRWNNFLGVLPHPLGLGPLFTGQWNLYAQNPYSSSHLFSTPQRAEIAILTLLGGFHPQTQSLWMTDIVHHHLAISILFLIAGHMYRTNFGIGHSIKEILEAHIPPGGRLGRGHKGLYDTINNSLHFQLGLALASLGVISSLVAQHMYSLPAYAFIAQDFTTQAVLYIHHQYITGFIMTGAFAHGAIFFIRDYNPEQHEDNVLARMLDHKEAIISHLSWDSLFLGFHTLGLYVYNDVMLAFGTPKKQILIEPIFAQWIQSTHSKTSYGFDVLLSSTNSSAFNAGRSIWLSGWLNTIIKSSNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGTLDACGSKLMPDKKDFGYSFPCDGPGQGDFGLGRILFGSFLDVKYVWLGYFLLALETHYTITG 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03170 843 Gene3D Photosystem I PsaA/PsaB 418 820 IPR036408 -
Aip04g03170 843 SMART 1433_4 8 252 IPR023410 -
Aip04g03170 843 Pfam Photosystem I psaA/psaB protein 277 342 IPR001280 GO:0009579|GO:0015979|GO:0016021
Aip04g03170 843 Pfam Photosystem I psaA/psaB protein 345 393 IPR001280 GO:0009579|GO:0015979|GO:0016021
Aip04g03170 843 Pfam Photosystem I psaA/psaB protein 423 808 IPR001280 GO:0009579|GO:0015979|GO:0016021
Aip04g03170 843 Gene3D Photosystem I PsaA/PsaB 248 342 IPR036408 -
Aip04g03170 843 PANTHER PHOTOSYSTEM I CHLOROPHYLL A APOPROTEIN A2 246 345 - -
Aip04g03170 843 PANTHER PHOTOSYSTEM I CHLOROPHYLL A APOPROTEIN A2 363 807 - -
Aip04g03170 843 SUPERFAMILY 14-3-3 protein 7 240 IPR036815 -
Aip04g03170 843 Gene3D - 1 247 IPR036815 -
Aip04g03170 843 PRINTS Plant photosystem I psaA and psaB protein signature 315 338 IPR001280 GO:0009579|GO:0015979|GO:0016021
Aip04g03170 843 PRINTS Plant photosystem I psaA and psaB protein signature 760 778 IPR001280 GO:0009579|GO:0015979|GO:0016021
Aip04g03170 843 PRINTS Plant photosystem I psaA and psaB protein signature 791 811 IPR001280 GO:0009579|GO:0015979|GO:0016021
Aip04g03170 843 PRINTS Plant photosystem I psaA and psaB protein signature 516 534 IPR001280 GO:0009579|GO:0015979|GO:0016021
Aip04g03170 843 PRINTS Plant photosystem I psaA and psaB protein signature 612 638 IPR001280 GO:0009579|GO:0015979|GO:0016021
Aip04g03170 843 PRINTS Plant photosystem I psaA and psaB protein signature 573 596 IPR001280 GO:0009579|GO:0015979|GO:0016021
Aip04g03170 843 PRINTS Plant photosystem I psaA and psaB protein signature 660 682 IPR001280 GO:0009579|GO:0015979|GO:0016021
Aip04g03170 843 Gene3D Photosystem I PsaA/PsaB 343 403 IPR036408 -
Aip04g03170 843 PANTHER OUTER MEMBRANE PROTEIN, OMPA-RELATED 246 345 - -
Aip04g03170 843 PANTHER OUTER MEMBRANE PROTEIN, OMPA-RELATED 363 807 - -
Aip04g03170 843 Pfam 14-3-3 protein 14 239 IPR023410 -
Aip04g03170 843 SUPERFAMILY Photosystem I subunits PsaA/PsaB 271 808 IPR036408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03170 Aip-Chr4 125561493 125569539 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03170 8 268 14-3-3 family AT5G10450 53.992 7.83e-92 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03170 K02690 - pop:4929662 823.157