Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03167 ATGGCTTCCATCACCATTATGGATTCATCAGAATCTGCATACTTAGAATACATTCAACAATACCTTCTTGAGAATGATTCAATCATTTTTACCAATGATCTCAAAATGGATGATTCTAAATCATGTCAAGCTGGTTCAAACCCTAATTGCGATAGCATTTCCGATACAACTTCTCATAGTGAGAGTCCTACCGGTGCCTCGGCAGGGCGTGAAGTGCACGCGCCTCCGACATGGAAGCGTTATAGGGGTGTGAGGCGTAGGCCGTGGGGGAAGTTTGCCGCGGAGATTAGGGATCCAAAGAAAAATGGGGCTAGGGTTTGGCTCGGAACTTATGAGACTGAAGAGAAAGCGGCTATAGCATATGATAAAGCCGCTTTTAAAATGCGCGGCCGAAAAGCCAAGTTGAATTTCCCTCATCTCATTGGCTCAGACGAAAAATCTGTCTCATCGTCTGAGCTCTCGTCTGAGCCAGTGATAGTGTCCGCTGTGAAACGGATTTCTCCAGAACCTTGTTTGCCATCCTCGCCTTCATCGGAGGATGATTCGAACTCGCCGGGGTCAAAGAGGAGGAGGAACCTAGCGGATTTACTGAATAAGATAGCCAAGAATAGAAACCAAACTAATAAGGTGGTTAAAATGGATCCAGAGGCAAATGTTGCTGATTATTGGTTGAATGATGAATTCAATATGATTCTAGTTTAA 702 0.4459 MASITIMDSSESAYLEYIQQYLLENDSIIFTNDLKMDDSKSCQAGSNPNCDSISDTTSHSESPTGASAGREVHAPPTWKRYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETEEKAAIAYDKAAFKMRGRKAKLNFPHLIGSDEKSVSSSELSSEPVIVSAVKRISPEPCLPSSPSSEDDSNSPGSKRRRNLADLLNKIAKNRNQTNKVVKMDPEANVADYWLNDEFNMILV 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03167 233 MobiDBLite consensus disorder prediction 169 189 - -
Aip04g03167 233 SUPERFAMILY DNA-binding domain 80 139 IPR016177 GO:0003677
Aip04g03167 233 Pfam AP2 domain 80 130 IPR001471 GO:0003700|GO:0006355
Aip04g03167 233 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 8 206 - -
Aip04g03167 233 SMART rav1_2 80 144 IPR001471 GO:0003700|GO:0006355
Aip04g03167 233 CDD AP2 79 140 IPR001471 GO:0003700|GO:0006355
Aip04g03167 233 Gene3D AP2/ERF domain 79 139 IPR036955 GO:0003700|GO:0006355
Aip04g03167 233 PRINTS Ethylene responsive element binding protein signature 81 92 IPR001471 GO:0003700|GO:0006355
Aip04g03167 233 PRINTS Ethylene responsive element binding protein signature 120 140 IPR001471 GO:0003700|GO:0006355
Aip04g03167 233 PANTHER DNA-BINDING DOMAIN 8 206 IPR044808 GO:0003700|GO:0009873
Aip04g03167 233 MobiDBLite consensus disorder prediction 40 76 - -
Aip04g03167 233 MobiDBLite consensus disorder prediction 40 65 - -
Aip04g03167 233 ProSiteProfiles AP2/ERF domain profile. 80 138 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03167 Aip-Chr4 125519638 125520568 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03167 34 179 AP2-EREBP Transcription Factor Family AT2G44840 49.045 1.72e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip04g03167 AP2 3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03167 K09286 - gmx:102663872 208.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g03167 04 125519638 125520568 Aip04g03167 04 125519638 125520568 ECH