Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03166 ATGGATTCCGATTATGAATTTCTAGAATCTGTTCAAGAATACCTTCTTGGACATGATTCCAACAACACGGTTGACCTTTTTGACCATAATACCCTCCAATCTCCCTCGCACAACCCCTTACCAAACCCTAAATCCGATATACTTCAAGAACAAGAAAGAGATACAAATGAAAATGAACATGCGCCTCCAACATGGAAGCGTTATAGAGGCGTGAGGCGGCGGCCGTGGGGGAAGTTCGCCGCGGAGATAAGGGATCCGAAGAAGAACGGAGCTAGGGTTTGGCTTGGAACTTATGAGAAGGAAGAAGAAGCTGCTTTGGCATATGATAGAGCTGCTTTTAAATTGCGTGGTCAAAAAGCTAAGCTCAATTTTCCTAATCTTTTTGGCTCTGATTCTGAAAATGTATCCTTAGAAATAATAGAGCCAATCATAAAGATCACAACTTGTAAGGAGAATTTCTCAGATTCTTCATCATCATCATCATCATCATCACTTGCAGGGTCAAAGAGAAAGAGGAACTTAACTCATTTACTAAATCAACTAGCCAAAAATAAGAGCCAAGCCAAAGTTTATGTAGGAGGAAATTAA 588 0.4048 MDSDYEFLESVQEYLLGHDSNNTVDLFDHNTLQSPSHNPLPNPKSDILQEQERDTNENEHAPPTWKRYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYEKEEEAALAYDRAAFKLRGQKAKLNFPNLFGSDSENVSLEIIEPIIKITTCKENFSDSSSSSSSSSLAGSKRKRNLTHLLNQLAKNKSQAKVYVGGN 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03166 195 Gene3D AP2/ERF domain 66 126 IPR036955 GO:0003700|GO:0006355
Aip04g03166 195 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700|GO:0006355
Aip04g03166 195 PRINTS Ethylene responsive element binding protein signature 107 127 IPR001471 GO:0003700|GO:0006355
Aip04g03166 195 PANTHER DNA-BINDING DOMAIN 2 187 IPR044808 GO:0003700|GO:0009873
Aip04g03166 195 SUPERFAMILY DNA-binding domain 67 126 IPR016177 GO:0003677
Aip04g03166 195 SMART rav1_2 67 131 IPR001471 GO:0003700|GO:0006355
Aip04g03166 195 Pfam AP2 domain 67 117 IPR001471 GO:0003700|GO:0006355
Aip04g03166 195 ProSiteProfiles AP2/ERF domain profile. 67 125 IPR001471 GO:0003700|GO:0006355
Aip04g03166 195 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 2 187 - -
Aip04g03166 195 CDD AP2 66 127 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03166 Aip-Chr4 125515335 125516040 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03166 21 130 AP2-EREBP Transcription Factor Family AT2G44840 55.932 3.63e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip04g03166 AP2 5.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03166 K09286 - gmx:548037 203.756
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g03166 04 125515335 125516040 Aip04g03166 04 125515335 125516040 ECH