Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03155 ATGGCATCCGAATTCGGACCACCAAATCCAATTCCCTGTGCTCAATACGGTCAATTCTTTCAACCATTCTTTCAACAAAATCCCAACTTTTGTCTAATAGTAGGATGTGATTGTTCCAGTTCTTCTTTAGTTTTTCCTCCTCTTTCATCTCCATCGTTTTTGTCATTGCCACCATCATCATTATCTCCTCTTCTACCATTATTGCTACCACCGTCATCATCACTAGCTCTTTCCCCACCAATATTACTACCACCACCACTTTTTTCTCCTGCCTCTACGCCTCCTCAAACTCTCCTGCCAACGAAACCTTCCTCTAAACCAACCCAGGTACTGAATTTTTCTCCTCCAACTTCAACTCCAGCATCATCTTTTTCGTCAAGCGGCCTCATCATTGAAATGGCAGCAACAGTCACTTTTGCCATTTTGATTGTGGTGCTTAGCGCTTTTGGTATTTTTTATTGGAAGAATAGAAAGAGAAAACATGATAAAGATCTCGAACTTAAAGGCAATAACGGAATAATAGAAATCTCCTCAAAGAACAGAATATTCAGATACGAGGAGTTGGCAGTTGCAACAGATGGATTCTCGAAAGCGAATTTGCTTGGAGAAGGTGGATTCGGTTATGTTCACAAAGGACTCCTTCCAAACGGCAAGGAGGCTGCCATCAAACAGCTCAAGGATGGAAGTAGGCAGGGAGAGCGTGAATTTCAAGCTGAAGTAGACATAATCACTAGGGTTCATCACAGGAATCTCGTTTCTTTGCTTGGATATTGCATCGCCGACCACCATAGACTTCTCGTCTATGAATTTGTTCCAAACAATACATTAGAGTTCCATCTACATGGTTATCCCAAGATCATCCATCGTGATATCAAAGCTGCTAACATTCTCCTCGATTTTAATTTCCAAGCGAAAGTTGCTGATTTTGGGCTTGCAAAGTTTTGCCCGGATATGAATACGCATGTTTCCACTCGAGTCATGGGAACTCTAGGGTATGTAGCCCCTGAATATGCTTCCAGTGGAAACCTCACTGAAAAAGCCGACGTTTTCTCCTTCGGAGTCATGCTTCTCGAGTTAATTACTGGCCGCCGACCAATAATTGATTCACATCATACTTTCATGGAGGCAATGCCTTTGCTAACAAAGGTTTTGAAAGAGAATAATTTTGAAGTTGTAGCTGACCAAAAGCTCCAAAATCAGTATGAACCAACCGAAATGGTTTCCATGCTGGCCTCTGCAGCTGCTTCTATACGATATGAAGCAAAGCTTCGACCAAAGATGAGCCAGATAGTTCGTGCTTTGGAAGGAGATGCATCTCAAGTAGCTGAGTTCACTTCTAATGTATTATCCTTAGATTCTGAGGCTGCTGCATACAGACGAGAAATGATTAAAATCATTTGTGACATGAGTGGATCCACGAGTTAA 1425 0.4196 MASEFGPPNPIPCAQYGQFFQPFFQQNPNFCLIVGCDCSSSSLVFPPLSSPSFLSLPPSSLSPLLPLLLPPSSSLALSPPILLPPPLFSPASTPPQTLLPTKPSSKPTQVLNFSPPTSTPASSFSSSGLIIEMAATVTFAILIVVLSAFGIFYWKNRKRKHDKDLELKGNNGIIEISSKNRIFRYEELAVATDGFSKANLLGEGGFGYVHKGLLPNGKEAAIKQLKDGSRQGEREFQAEVDIITRVHHRNLVSLLGYCIADHHRLLVYEFVPNNTLEFHLHGYPKIIHRDIKAANILLDFNFQAKVADFGLAKFCPDMNTHVSTRVMGTLGYVAPEYASSGNLTEKADVFSFGVMLLELITGRRPIIDSHHTFMEAMPLLTKVLKENNFEVVADQKLQNQYEPTEMVSMLASAAASIRYEAKLRPKMSQIVRALEGDASQVAEFTSNVLSLDSEAAAYRREMIKIICDMSGSTS 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03155 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 286 298 IPR008271 GO:0004672|GO:0006468
Aip04g03155 474 ProSitePatterns Protein kinases ATP-binding region signature. 201 223 IPR017441 GO:0005524
Aip04g03155 474 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 176 282 - -
Aip04g03155 474 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 284 439 - -
Aip04g03155 474 Gene3D Phosphorylase Kinase; domain 1 156 270 - -
Aip04g03155 474 SMART serkin_6 195 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g03155 474 MobiDBLite consensus disorder prediction 94 116 - -
Aip04g03155 474 ProSiteProfiles Protein kinase domain profile. 195 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g03155 474 Pfam Protein kinase domain 279 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g03155 474 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 284 439 - -
Aip04g03155 474 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 176 282 - -
Aip04g03155 474 Gene3D Transferase(Phosphotransferase) domain 1 277 448 - -
Aip04g03155 474 SUPERFAMILY Protein kinase-like (PK-like) 178 435 IPR011009 -
Aip04g03155 474 MobiDBLite consensus disorder prediction 102 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03155 Aip-Chr4 125314904 125321906 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03155 102 435 Trihelix Transcription Factor Family AT5G38560 43.447 1.04e-103 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Aip04g03155 Pkinase 1.2e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03155 - - aip:107637227 712.22