Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03154 ATGGCATCCAAATTGGGACCACCAAATCCTGTTCCCTGTGCTCATTACGGTCAATTCTTTCAAAAAAATCCCAACCTTTGTCAAGCAGTAGGATGTGATTGTTTTCATCCTTCTCTAGTTTCTCCTCCTCTTCTTTATCCACCGTCTTTGCCGTCGCCGCAGCCACCACCACCACCATTACCTTCTCCTCCGTCATTGTTGCCGCCACCACCACCATTGTCACCGTCACCGTTACCGCCACTAGCTCTTTCTCCACCAATGTCGCCACCACCACGACTTTTCTTTCCTGACTCTCCGCCTCCTCAAACTTTTCTGCCGACGAAACCTTCCTCTAAACCAACCCAGGTACTACGTTTTCCTCCTCCAACTTCAACTCCGGCACCATTTTTTTCGTCAAGTGGCCTCATCGTTGAAATGGCGGCAGCAATCACTTTTGCCATTTTGATTGTGGTGCTTTGCACTTTTGGCATTTTTCATTGGAAGAATAGGAAGAGAGAACATGATAAAAGCCTCGGACTTAAAGGCAATAGCGGCATAATGGAAATGTCATCAAAGAACAGAATATTCAGATACGAGGAGTTGGCAGTTGCAACAGATGGGTTCTCCAAAGCAAATTTGCTTGGAGAAGGTGGATTCGGTTTTGTCCACAAAGGACTCCTTCCAAACGGCAAGGAGGCTGCCATCAAACAGCTCAAGGATGGAAGTAGGCAGGGAGAGCGTGAATTCCAAGCTGAAGTAGACATAATCACCAGGGTTCATCACAGGAATCTCGTTTCTTTGCTTGGATATTGCATGGCCGGCCACCACAGGCTTCTCGTCTACGAATTTGTTCCAAACAATACATTAGAGTTCCATCTACATGGGCAAGGTCCTACTATAGATTGGCCTACAAGAATGAGGATTGCTCTAGGAGCTGCTAAGGGAATAGCATATCTTCATGAGGAATGTTATCCTAAGATCATCCATCGTGATATCAAAGCTGCTAACATTCTCCTCGATTTTAATTTCCAAGCGAAGGTTGCTGATTTTGGGCTTGCAAAGTTTTGCCCCGATATGAATACGCATGTTTCCACTCGAGTCATGGGAACTCTAGGGTATGTAGCTCCTGAATATGCTTCCAGTGGAAACCTCACTGAAAAAGCCGACGTTTTCTCCTTCGGAGTCATGCTTCTCGAGTTAATTACTGGCCGCCGACCAATAATTGATTCACATCATACTTTCATGGAGGCAATGCCTTTGCTAACAAAGGTTTTGAAAGAGAATAATTTTGAAGTTGTAGCTGACCAAAAGCTACAAAATCAGTATGAACCAACCGAAATGGTTTCCATGCTGGCCTCTGCAGCTGCTTCTATACGATATGAAGCAAAGCTTCGACCAAAGATGAGCCAGGGAAAGTTTGTTATGGCTGTTAGACTTGTTGCTACCTGA 1428 0.4524 MASKLGPPNPVPCAHYGQFFQKNPNLCQAVGCDCFHPSLVSPPLLYPPSLPSPQPPPPPLPSPPSLLPPPPPLSPSPLPPLALSPPMSPPPRLFFPDSPPPQTFLPTKPSSKPTQVLRFPPPTSTPAPFFSSSGLIVEMAAAITFAILIVVLCTFGIFHWKNRKREHDKSLGLKGNSGIMEMSSKNRIFRYEELAVATDGFSKANLLGEGGFGFVHKGLLPNGKEAAIKQLKDGSRQGEREFQAEVDIITRVHHRNLVSLLGYCMAGHHRLLVYEFVPNNTLEFHLHGQGPTIDWPTRMRIALGAAKGIAYLHEECYPKIIHRDIKAANILLDFNFQAKVADFGLAKFCPDMNTHVSTRVMGTLGYVAPEYASSGNLTEKADVFSFGVMLLELITGRRPIIDSHHTFMEAMPLLTKVLKENNFEVVADQKLQNQYEPTEMVSMLASAAASIRYEAKLRPKMSQGKFVMAVRLVAT 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03154 475 ProSiteProfiles Protein kinase domain profile. 201 475 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g03154 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 320 332 IPR008271 GO:0004672|GO:0006468
Aip04g03154 475 MobiDBLite consensus disorder prediction 47 107 - -
Aip04g03154 475 Gene3D Phosphorylase Kinase; domain 1 163 276 - -
Aip04g03154 475 MobiDBLite consensus disorder prediction 47 115 - -
Aip04g03154 475 ProSitePatterns Protein kinases ATP-binding region signature. 207 229 IPR017441 GO:0005524
Aip04g03154 475 SMART serkin_6 201 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g03154 475 PRINTS Proline rich extensin signature 44 56 - -
Aip04g03154 475 PRINTS Proline rich extensin signature 59 80 - -
Aip04g03154 475 PRINTS Proline rich extensin signature 109 126 - -
Aip04g03154 475 PRINTS Proline rich extensin signature 85 101 - -
Aip04g03154 475 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 180 463 - -
Aip04g03154 475 Pfam Protein kinase domain 202 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g03154 475 Gene3D Transferase(Phosphotransferase) domain 1 277 469 - -
Aip04g03154 475 SUPERFAMILY Protein kinase-like (PK-like) 176 463 IPR011009 -
Aip04g03154 475 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 180 463 - -
Aip04g03154 475 CDD STKc_IRAK 207 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03154 Aip-Chr4 125287155 125292678 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03154 112 465 Trihelix Transcription Factor Family AT1G68690 47.607 1.71e-120 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Aip04g03154 Pkinase 7.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03154 - - aip:107637228 734.947