Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03143 ATGGAAGAGAAATTTGATTTAGTAACTGATGTGAATCCAAAAAAGCTTCAATGGCATTTCAAAGTGTATGTTGTTAGGATATGGGAGGTTCCAAGCAAATACAATGAGAAAGAGATTGGGTCGATTGAAATGATTCTCCAAGATGCAAAGATGTACACAATGACTAATTTTATTGTGTTCGACCACAAGTATAAGAAGAATGGTGTGAGTAGGATGGTATTGACATTCTCCCAGAGGACTTTGGTCAATCATGTTAAGAAGCCAAGCTTTCCCCTTGAGGCTTTCTACCTTAAGTCTTATGTAGATCTTCTAACTGCTGACAAATTACCAGATTCTGAAATGTTTGATTTGATCGGAGAGGTTGTTAGTAAGGAAGATCCTAGGGACTTGATCACTAGCAAAGGGAAGGAGACTAAGCGATTGGTTATCATCCTTCAAGACCTCGAGATCAATTGCATTTTGTTTGGTGAGTTGGTTGACCATCTCCTACCGCACCTTGAAGAGGAGAGAGCTGAACCACTTATTGTTGTGCTGCAATATTTTAAGGCAACAAGGTGGAATGGGAAAACATCGGTGCAAAGCAACTTTAAAATCTCGAAGGTCCATATTAATCCTGAATTAACAAAAGTCATCCAATTCAAGAGCAAGTTAAGTAGTCCTGCCGCATCAAATCCGACCAGGATCAGCCAGGTGTCATCTCCTAATGCTTGGTCTGCCTTGGATGAGTTAAAACACGGAAGTGTGGCTATCAAGACAATAGAGGAAGCTCTCAATTCCATGGAGGAAGGTCCCATATGGATATTAGGGACGATTGTATCCATCAATGCGGGAAATGATGATTGGTTTTACAAATCTTGCAGAAGGTGCCCTAAAAAAGTTGAAACCCCCATTGGAAATAGATATGAATGTGGCAAGTGCGGACACACACACGGAACAGCGGCTCTTAGGTACAAATTAGAGGTAACAGTGCACGATGGAACAGGGAGCATGTCACTACTCCTGTGGGATAGGGAGACCACACAGTTGTGTGGAAAGACAGTGGACAAGATTATTTGTGACAATGACCATGACTACAACAACTTGGTTGACATTTCAGGCATTGTGGTCAATCTTACGAGTGATACTGATACTCATCTTACTATGGATTCTGCTGAGGAAAGTGTTTCTAGCCTCAAGTTCAAAACACTAACTAAGAGAACTACCAGCGGTGTAAAAATTGGCAACATCAATGTTAACCTGATTGAGGAGGAAGGACAAAACTCTACTAATAGGCTCAGGAGCAAGGGGACGAAGAAGCTAAAATCTCAGGTTAATGATTCTGATGTTTAA 1329 0.4108 MEEKFDLVTDVNPKKLQWHFKVYVVRIWEVPSKYNEKEIGSIEMILQDAKMYTMTNFIVFDHKYKKNGVSRMVLTFSQRTLVNHVKKPSFPLEAFYLKSYVDLLTADKLPDSEMFDLIGEVVSKEDPRDLITSKGKETKRLVIILQDLEINCILFGELVDHLLPHLEEERAEPLIVVLQYFKATRWNGKTSVQSNFKISKVHINPELTKVIQFKSKLSSPAASNPTRISQVSSPNAWSALDELKHGSVAIKTIEEALNSMEEGPIWILGTIVSINAGNDDWFYKSCRRCPKKVETPIGNRYECGKCGHTHGTAALRYKLEVTVHDGTGSMSLLLWDRETTQLCGKTVDKIICDNDHDYNNLVDISGIVVNLTSDTDTHLTMDSAEESVSSLKFKTLTKRTTSGVKIGNINVNLIEEEGQNSTNRLRSKGTKKLKSQVNDSDV 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03143 442 CDD RPA1_DBD_C 250 364 IPR013955 -
Aip04g03143 442 Gene3D - 241 402 IPR012340 -
Aip04g03143 442 SUPERFAMILY Nucleic acid-binding proteins 251 360 IPR012340 -
Aip04g03143 442 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 339 - -
Aip04g03143 442 Pfam Replication factor-A C terminal domain 269 359 IPR013955 -
Aip04g03143 442 MobiDBLite consensus disorder prediction 420 442 - -
Aip04g03143 442 CDD RPA1_DBD_B_like 116 215 - -
Aip04g03143 442 SUPERFAMILY Nucleic acid-binding proteins 111 218 IPR012340 -
Aip04g03143 442 Gene3D - 89 225 IPR012340 -
Aip04g03143 442 PANTHER REPLICATION FACTOR A 1, RFA1 22 339 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03143 Aip-Chr4 125031269 125033749 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03143 89 328 Core DNA Replication Machinery Family AT2G06510 24.803 2.05e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03143 - - aip:107607840 646.351