Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03139 ATGTCGGAAAAAATGGTTGTCTTAATATTGCTTTGTGTGTTTATAGTACAAGTGTCTTCATCAAGTGAAGCAAATGCACTCTTAAAATGGAAGGCCAGCCTTGAGAACCAAAGCCAAGTTATGTTATCATCTTGGAAGAACGGGACAAGTCCATGCAAATGGAAAGGAATTCAATGTGACAAATCAAAATCCATCACAACCATCAATCTTGAAAACTTTGGACTCAAAGGTACACTTCACAGTCTTAGCTTCTCTTCATTTCCCAACCTCATTTCCATAAACATATACAACAACTTGTTCCATGGAACCATTCCCTCACACATTGGTAACATGTCAAAAGTCAACACTTTGAACTTTTCTTTAAATCATTTTGAGGGTTCCATCCCTAAAGAATTGTGGACACTGAGGAGTTTACAAAAGCTTGATCTTTCATTGTGTTATCATCTAAGTGGACCTATCCCTTCTTCCATTGAAAACTTGGCCAACTTGACATATCTAGACTTAGGAGAAAACAATCTTTCTAGCCACATTCCTCCTGAGATTGGGAAACTAAGAAACCTTTTGTTTCTTGGTATTGCTGAGAGTAATCTTGTTGGTTCCATTCCCCATGAAATTGGCATGTTAACAAATCTTGAGTATCTTGATTTGTCAGGAAATGTTCTCTCTGGTAATATCCCTTCTACAATTAGTAACATGACCAATTTGCATGAAGTTTCAATTTCTAATAACACCCTCAATGGTACAATCCCTTCCTCCATTGGGAGCATGTCTAACTTGACATTGCTATGGCTTGATGGCAATCAACTTTCTGGATCCATCCCTGCATCTATAGGAAACTTGTCTAATCTCTATTCGCTTCAACTTGATTCGAATAGCCTCACCGGATCCATTCCTTCCACAATTGGAAACATGACAAGTCTTGTTGAGATTTTTCTCCGCTTTAACAATCTTTCAGGACACATTCCTGCCTCTGTTGGCAATTTGATCAACTTGGAATCCTTATATCTCCAAGGAAACAATCTCTCTGGATCTATTCCTGACTCAATTGGAAAGTTGAAAAGGCTCTCCTTTCTTGAACTGTCCTTTAACAAACTCACTGGCACCATTCCACACTCAATTAATAACATTACCAACATGATTGACTTTCTAGTAGCCTCAAACAATCTCACTGGTCAATTGCCACCTAACATTTGCTTAGGTGGTTCATTGAATTTCTTCAATGTTGATCACAACCATTTCACTGGTCCAGTACCAAGTACCTTAAAGAACTGCTCTAGTCTTGTTAGAATAAGGTTAGAGCAGAACCATTTGAAGGGAGACATATCACAAGATTTTGGCATTTATCCTAATTTGGTGCATATTGACCTGAGTGACAACAAATTTTATGGTCAAATTTCACCAAACTGGGGGAAGAGCCATAATCTTCAGAACTTGTTGATGTCCAATAATAATATTTCTGGTGCTATACCAATACAAATTGTTGAGGCTACCAATCTAGGAAGGCTTCATCTTTCTTCTAATCATTTGAGTGGAAAGATTCCAAATGAAATAAGAAATATGAGAAGACTGTTTGAACTCAAGATCAGCAACAATCATCTTTCAGGAAACATTCCATCAGATATAGGATCATTGCATGGTCTTCAAATCTTGCACCTAGCAGGAAATGAATTGAGTGGCAACATACCAAGACAAGTTGTGCAGTTACCCAACTTGTTGGAATTGAATTTGAGCAACAACAAACTAGAGGGAAGTATCCCTTCTGATTTTCAATCATTGCAAACTCTTTACTCTCTTGATCTTAGCGGCAATTTGTTGAATGGACCAATACCAAAAGTGCTTGGAGAGTTGAAGGAATTGCGATTATTGAACCTTTCACACAACAATCTTTCTGGGACAGTTCCATCAAGTTTTGATGGCATGTCAAGCTTGATTTCTGTCAACATATCATACAATCAACTAGAAGGCCCTCTTCCAAACAATAAAGCCTTTCTTAGTTCTTCAATTGAATCATTGAAAAATAACAAAGGCTTGTGTGGTAATGTATCTGGCTTGGTGCCATGTCCAAGCAATCTTATCAGCAAAAATCATAAGGTCATGTTATTGGTATTGCTTCTTGTCTTTGGAGTACTAGTACTTGTGCTTTCTGTGGTGGCTGTTTCTGTATATATTCTTTGTAGAAAAGCAAGAAAGAAAACAGGCACAAATCAAGAAACACAGCCAAAAGAACTTTTTTCAATATGGAGCCATGATGGGAAAATGGCATTTGAAACTATCATTGAAGCCACCAACAATTTTGATGACAAATATATCATTGGAATTGGAGGGCAAGGATCTGTTTACAGGGCTGAGTTGCCTTCAGGTATGGTTGTTGCTGTGAAGAAGCTTCATACAGAAACATCCAACTTGAAATCATTTGAAAATGAGATCCAAGCATTGACAGAAATCAGGCACCGAAACATCATAAAGCTGTATGGTTTTTGCCAGCACTCGCGGTTCTCATTTCTGGTTTATAAGTTCTTGGAAGGTGGAAGCTTGGATCAAGTACTAAGAGATGAAACACATGCAACTCTGTTTGATTGGAAAAAGAGGGTGAATGTGGTTAAAGGAGTCGCAAATGCTTTGTCATACATGCATCATGATTGCATACCCCCTCTTGTTCATCGCGACATATCAAGCAAGAATGTTCTTCTAGATTCAGACTATGAAGCTCATGTATCTGATTTTGGAACAGCCAAGTTCTTGAAACCTGGGTCAAGTTGGACAACACTTGCAGTCACCTTTGGCTATGCAGCTCCAGAGCTAGCTCAGACAATGGAAGTGACAGAGAAATGTGATGTATATAGTTTTGGAGTGCTTTGTTTGGAGATTCTTATGGGAAAGCATCCTGGGGATCTGATAAGTTCATTGTTGTCACCATCAACAGCATTAATCAGTTGCAATTTGTTATTGGTTGAAGTCATAGATCAGAGACCTCCACATCCTGAAGAATTAATGGTTGGTGATATCATGAAGATCATAAAGTTGGCACTGAATTGCTTGAGCCACAGTCCACAATCTCGACCAAGCATGCATCAAGTGTCCAAAGAGCTTATGATAGGAAAATTGCCTTTTGCTAATCACCAGTTTCCTATCATCAGAATTGGACAGCTCAATGAAGAATGA 3162 0.3839 MSEKMVVLILLCVFIVQVSSSSEANALLKWKASLENQSQVMLSSWKNGTSPCKWKGIQCDKSKSITTINLENFGLKGTLHSLSFSSFPNLISINIYNNLFHGTIPSHIGNMSKVNTLNFSLNHFEGSIPKELWTLRSLQKLDLSLCYHLSGPIPSSIENLANLTYLDLGENNLSSHIPPEIGKLRNLLFLGIAESNLVGSIPHEIGMLTNLEYLDLSGNVLSGNIPSTISNMTNLHEVSISNNTLNGTIPSSIGSMSNLTLLWLDGNQLSGSIPASIGNLSNLYSLQLDSNSLTGSIPSTIGNMTSLVEIFLRFNNLSGHIPASVGNLINLESLYLQGNNLSGSIPDSIGKLKRLSFLELSFNKLTGTIPHSINNITNMIDFLVASNNLTGQLPPNICLGGSLNFFNVDHNHFTGPVPSTLKNCSSLVRIRLEQNHLKGDISQDFGIYPNLVHIDLSDNKFYGQISPNWGKSHNLQNLLMSNNNISGAIPIQIVEATNLGRLHLSSNHLSGKIPNEIRNMRRLFELKISNNHLSGNIPSDIGSLHGLQILHLAGNELSGNIPRQVVQLPNLLELNLSNNKLEGSIPSDFQSLQTLYSLDLSGNLLNGPIPKVLGELKELRLLNLSHNNLSGTVPSSFDGMSSLISVNISYNQLEGPLPNNKAFLSSSIESLKNNKGLCGNVSGLVPCPSNLISKNHKVMLLVLLLVFGVLVLVLSVVAVSVYILCRKARKKTGTNQETQPKELFSIWSHDGKMAFETIIEATNNFDDKYIIGIGGQGSVYRAELPSGMVVAVKKLHTETSNLKSFENEIQALTEIRHRNIIKLYGFCQHSRFSFLVYKFLEGGSLDQVLRDETHATLFDWKKRVNVVKGVANALSYMHHDCIPPLVHRDISSKNVLLDSDYEAHVSDFGTAKFLKPGSSWTTLAVTFGYAAPELAQTMEVTEKCDVYSFGVLCLEILMGKHPGDLISSLLSPSTALISCNLLLVEVIDQRPPHPEELMVGDIMKIIKLALNCLSHSPQSRPSMHQVSKELMIGKLPFANHQFPIIRIGQLNEE 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03139 1053 ProSiteProfiles Leucine-rich repeat profile. 330 352 IPR001611 GO:0005515
Aip04g03139 1053 PANTHER LRR RECEPTOR-LIKE KINASE 240 1050 - -
Aip04g03139 1053 Gene3D Ribonuclease Inhibitor 273 379 IPR032675 -
Aip04g03139 1053 Pfam Leucine Rich Repeat 210 231 IPR001611 GO:0005515
Aip04g03139 1053 Pfam Leucine Rich Repeat 570 592 IPR001611 GO:0005515
Aip04g03139 1053 SMART LRR_typ_2 160 184 IPR003591 -
Aip04g03139 1053 SMART LRR_typ_2 568 591 IPR003591 -
Aip04g03139 1053 SMART LRR_typ_2 280 304 IPR003591 -
Aip04g03139 1053 SMART LRR_typ_2 256 279 IPR003591 -
Aip04g03139 1053 SMART LRR_typ_2 208 232 IPR003591 -
Aip04g03139 1053 SMART LRR_typ_2 328 352 IPR003591 -
Aip04g03139 1053 SMART LRR_typ_2 616 639 IPR003591 -
Aip04g03139 1053 SMART LRR_typ_2 520 544 IPR003591 -
Aip04g03139 1053 Pfam Protein kinase domain 767 1028 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g03139 1053 Pfam Leucine rich repeat N-terminal domain 21 60 IPR013210 -
Aip04g03139 1053 Gene3D Ribonuclease Inhibitor 177 272 IPR032675 -
Aip04g03139 1053 Gene3D Ribonuclease Inhibitor 20 176 IPR032675 -
Aip04g03139 1053 Gene3D Phosphorylase Kinase; domain 1 725 839 - -
Aip04g03139 1053 ProSitePatterns Tyrosine protein kinases specific active-site signature. 885 897 IPR008266 GO:0004672|GO:0006468
Aip04g03139 1053 Gene3D Ribonuclease Inhibitor 385 695 IPR032675 -
Aip04g03139 1053 ProSiteProfiles Leucine-rich repeat profile. 570 593 IPR001611 GO:0005515
Aip04g03139 1053 PANTHER LRR RECEPTOR-LIKE KINASE 10 153 - -
Aip04g03139 1053 PANTHER LRR RECEPTOR-LIKE KINASE 148 250 - -
Aip04g03139 1053 Gene3D Transferase(Phosphotransferase) domain 1 840 1035 - -
Aip04g03139 1053 Pfam Leucine rich repeat 281 341 IPR001611 GO:0005515
Aip04g03139 1053 Pfam Leucine rich repeat 594 653 IPR001611 GO:0005515
Aip04g03139 1053 ProSiteProfiles Protein kinase domain profile. 765 1038 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g03139 1053 SMART LRR_sd22_2 304 333 - -
Aip04g03139 1053 SMART LRR_sd22_2 616 642 - -
Aip04g03139 1053 SMART LRR_sd22_2 352 378 - -
Aip04g03139 1053 SMART LRR_sd22_2 256 282 - -
Aip04g03139 1053 SMART LRR_sd22_2 208 234 - -
Aip04g03139 1053 SMART LRR_sd22_2 160 189 - -
Aip04g03139 1053 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 10 153 - -
Aip04g03139 1053 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 148 250 - -
Aip04g03139 1053 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 240 1050 - -
Aip04g03139 1053 SUPERFAMILY RNI-like 345 660 - -
Aip04g03139 1053 Coils Coil 795 815 - -
Aip04g03139 1053 SUPERFAMILY Protein kinase-like (PK-like) 748 1030 IPR011009 -
Aip04g03139 1053 SUPERFAMILY RNI-like 68 414 - -
Aip04g03139 1053 PRINTS Leucine-rich repeat signature 568 581 - -
Aip04g03139 1053 PRINTS Leucine-rich repeat signature 355 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03139 Aip-Chr4 124976106 124979349 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03139 5 932 Receptor kinase-like Gene Family AT4G08850 45.032 0.0 750
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Aip04g03139 Pkinase 5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03139 - - aip:107635237 1382.47