Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03130 ATGTTATCGTTGTTGCTGCCTTTGGCGGAGGTTCTAGATTTGCTTCTCTGGCTTCGATTTGAGGTTTTATTGCCGCCGTTCATCTCCTCACTGCCGTTCATCTGCTCGTCGCCGTTCATCTCCTCACCGCCGCAAGCAACAACCTATTGTTGCTGCCTCCAACTAAGCTTGTATGATTTGGTTCTACCATCCATATCAATTCACAAGGACATTAGATTCTTCGAGTTGAACACAGGTGCCAAGATACCTTCTGTGGGATTAGGAACTTTTCAGGCTGAAAATCCTGGAGCCTTGGCCAAAGCAGTTACCACCGCTATCAAGCTTGACATACATTATTCAATTCCAAAGACAATGCTCCAGAAAAGGATATTTGGTCATGGTGAAATTAAAGAAATCTATGAATCTCTTGAAGTGAATCATGTGAAATTCATCGAGTTCTATGATGTGCGAGCTGCCAAAGCTTCTCTTGGAGCTTTAAACAGGATCTGCATTCCTGGGAAGCAAATCAAGCTTGAACATGGCCATCCTAGAATTGCTATGTATTGGCTCGGGGCTGGTGCTATGCAGTTAAACTTTGCAACTGAGAAACATTTTGCAACTGAGAAACAAAGAAGAGAGCAACTGAATGGCAAATACAAAATCCTGAGAAGTCTTATCCCAAGCCCCACAAAGGCTTTGCTACAGGCTCTTGGTGATAGGAAGGGTATTAATCGGTTTGGTGACTTCTCTGCTCCACTTGATGAAGCATTAATACACGTTTCACTGCTGGTTATGGATGAATTTAACTGGGCTCATGAACAAAAGGTGGTTACGACTTTCAGTGCACCCAACTACTGTTACCGATGTGGGAACATGGCTTCCATATTGGAGGTTGATGATTGCAAGGGCCACACATTTATCTTGGTTGGTGCAAGAGACATTTTCTTGCCAGGAAGAGCAACAAGCAAAAATTTAACCCAGATTTCTACAATTGGAATAGAATCAAGGTTAAATATTGTGATGGTTCATTGTTTACTGGTGACATCGAAGCAGTGGATCCTAAAACCAATTTACACTACAGAGGAGGAAGAATTTTCGTTGCTTTCATTGAAGACTTGCTGGCAAAAGAAATGA 1113 0.4241 MLSLLLPLAEVLDLLLWLRFEVLLPPFISSLPFICSSPFISSPPQATTYCCCLQLSLYDLVLPSISIHKDIRFFELNTGAKIPSVGLGTFQAENPGALAKAVTTAIKLDIHYSIPKTMLQKRIFGHGEIKEIYESLEVNHVKFIEFYDVRAAKASLGALNRICIPGKQIKLEHGHPRIAMYWLGAGAMQLNFATEKHFATEKQRREQLNGKYKILRSLIPSPTKALLQALGDRKGINRFGDFSAPLDEALIHVSLLVMDEFNWAHEQKVVTTFSAPNYCYRCGNMASILEVDDCKGHTFILVGARDIFLPGRATSKNLTQISTIGIESRLNIVMVHCLLVTSKQWILKPIYTTEEEEFSLLSLKTCWQKK 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03130 370 Pfam Helix-loop-helix DNA-binding domain 195 222 IPR011598 GO:0046983
Aip04g03130 370 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 254 301 - -
Aip04g03130 370 SUPERFAMILY Metallo-dependent phosphatases 261 308 IPR029052 -
Aip04g03130 370 SUPERFAMILY RNA-binding domain, RBD 109 177 IPR035979 GO:0003676
Aip04g03130 370 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-4 CATALYTIC SUBUNIT 254 301 - -
Aip04g03130 370 Gene3D - 245 307 IPR029052 -
Aip04g03130 370 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 192 256 IPR011598 GO:0046983
Aip04g03130 370 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 195 223 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03130 Aip-Chr4 124821840 124825814 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip04g03130 IGPD 9.2e-06 CL0329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03130 K04382 - aip:107635253 244.973