Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03124 ATGCCACCAATAATGTTCCAAAATACTACTATTGTCTTAACATTCCTTTGTGTCCTTATTCTAAAACTCTCTTCAGCTGATCAAAACATTGAAGCAGATGCACTCTTAAAGTGGAAGGCCACACTTGAGAAGCAAAGCCAAGTTATGTTATCATCTTGGAACAACGGCACAAGTCCATGCAGATGGAAAGGAATTCAATGTGACAAATCAAAGTCAATCTCAACCATCAATCTTGAAAACTTTGGACTCAAAGGTACACTTCACAGTCTTAGTTTCTCTTCATTCCCCAACCTCATTTCCATAAACATCTACAACAACTTGTTCAATGGAACCATTCCACCACAAATTGCTAACATGTCCAAAGTTAACAGCTTGAACATGTCTTCAAATCTTTTTGATGGTTCTATCCCTAAAGAGTTGTGGACATTGAGCAGTTTACAGAGTCTTGATCTTTCTTTGTGCCATCTAAGTGGATCAATCCCGGGTTCCATTTCGAATTTGGCCAACTTATCATTTCTAGATTTATCTGACAATCACAATCTGTCAGGCCAGATTCCACCTGAGATTGGTAAACTAAACAAACTTGTGTTTCTTGGGATTGGAAACAATCAAATCTCTGGCTCCATTCCCCAAGAAATTGGAATGTTAACAAAGCTTGAGTATCTTGAATTATCAAGAAACACTCTCTCTGGTACTATCCCTTCAACAATTGCTAACATGAGCAGTTTAAATAGGCTTTACCTTGCTAATAACACCTTGTTTGGGCCAATCCCAGCTTCCATGTGGAACATGTCTACCTTGTCATGGCTAAACCTTTATAATAACCAACTTTCTGGATCAATCCCTGCTTCAATAGAAAACTTGGTCAACCTGGAGTTACTTGAAATTGAGAAGAACCATTTTTCAGGATCCATTCCTTCCACAATTGGAAACATGACAAAGCTCACCTGGATATTTCTTCGCCACAATAATTTTTCTGGCGAAATTCCTAGCTCCATTGGTAATTTGATCAATTTGATCACCCTTGCTCTTCAAGGAAACAATCTATCAGGAGCTATTCCTGACACAGTTGGAAAGTTGAAAAGCCTATTCTCTTTAGAATTGTCTGCCAACAAACTCAGTGGTAGCATTCCACAAGTTATCAATAACCTTACCAACATGGTTTACTTTTTGGTAGAAGAAAATGATCTATCCGGCCACTTGCCACCTCAAATTTGCTTAGGTCGTTCATTAGGATACTTGATGGCTGGTAACAATCATTTTAGTGGTCCAATTCCAAGTAGCTTGAAGAACTGCTCTAATCTTGCTAGAATAAGGTTAGAGTATAACCATTTGGAAGGAGACATAACACAAGACTTTGGCATTTATCCTAATTTGAAATTCATTGACCTGAGTGACAATAAATTATATGGCCAAATTTCGCCAGATTGGGGGAAGTGCCAGAATCTTGAAAACTTGATAATATCCAACAATAACATTTCTGGTGGCATACCATCAGAAATTGGTGAACTTACCAACTTGGGAAGACTTCACCTTTTCTCCAACCAATTAACTGGAAAGATTCCAAGAGAATTGGGAAATATGAAAAGCCTGCTTGAATTCAAGATCAGTGACAACCATTTCTCAGGAAATATTCCAGCAGAAATAGGACTATTGCATGATCTTCAAATCTTGCACCTTGGAGGAAATGAGTTGAGTGGCAATATACCAAGACAAGTTGTGCAGTTACCCAACTTGTTGGAATTAAACTTGAGCAACAACAAACTACAGGGAAGCATCCCCTCTGACTTCCGGTCGTCGCAGCCTCTGTATTCTCTTGATCTTAGTGGGAATATGTTGCATGGACAAATACCAATAGTGCTTGGAGAGTTGAAACAATTGAAATTGTTGAACCTCTCTCACAACAATCTTTCTGGCACCATTCCATCAAGTTTTAATGGTATGTCAAGCTTGATTTCTGTCAACATATCATACAACCAGTTAGAAGGGCCACTTCCAGACAATAACCGAGCCTTTCAGAATGCTACGATTGAATCATTGAAAAATAACAAAGGCTTGTGTGGTAATATCACTGGCTTGGTGCCATGCCCAAGCAGCAGTCCTAGCCGTAAAAGTCACAAGGTCATGTTATTGGTATTACTTGTTATATTTGGAGTACTAGTACTTGTGCTTTGTATGGCGGCTGTTTCATTGTACTTTCTTTGTAGAAGTGCTAGAAACAAAGACAACTCAGCTAAAGAAGTGCAACAAGTAGAAGAACAGTTTTCCATATGGAGCCATGATGGGAAAATGGCGTTTGAAACTATCATTGAAGCTACCAATAATTTTGATGACAAACATCTCATTGGAATTGGAGGGCAAGGATCCGTTTACAGGGCTGAGTTGCCTTCAGGAATGGTTGTTGCTGTGAAGAAACTTCATACTGAATCAGATGCAGAGGATAAGTCCAATTTGAAAGCTTTTGAGAATGAGATTGAAGCATTGACAGAAATGAGGCACCGCAACATCATAAAGCTATATGGATTCTGCCAGCATTCTCGGTTCTCTTTTTTGGTTTATGAATTCTTGGAAGGTGGCAGTTTGGATCAAGTATTTGGCAATGAAGCAAAAGCAAGTGCATTTGATTGGATGAAGAGGGTGAATGTGGTTAAAGGAGTTGCTAATGCTTTGTCATACATGCATCATGATTGCAAACCCCCTATGGTTCATCGCGACATATCAAGCAAGAACATTCTGTTGGACTCAGAATATGAAGCTCATGTCTCTGACTTTGGGACTGCTAAGTTTTTAAAGCCAGATTCAAATTGGACCACACTTGCAGTCACCTATGGTTATGGGGCTCCAGAGCTAGCTCAGACTATGGAAGTGACAGAGAAATGTGATGTATATAGCTTTGGAGTTCTTTGTTTGGAGATCCTCATAGGAAAGCATCCAGGAGATTTGATCAACTCATTGTTGTCACCATCAACAGCATCAATAACATACAATTTGTTATTGGTTGATGTCATAGATCATAGACCTCCTTATCCTAAGAACTCAATTGTTGGGGAAATCATGTGGATCACGAAGTGGGCACTTGAGTGCTTGAGTCAAAGTCCACAATTTCGGCCAACCATGCATCAAGTTTCTAAAGAGCTTATGATGGGAAAAGCACCTTTACCTGATGACCAATTTCCTATGATCAGGATTGGACAACTCAATGAAGAATGGGAAACTCCACTTATTTGA 3228 0.3925 MPPIMFQNTTIVLTFLCVLILKLSSADQNIEADALLKWKATLEKQSQVMLSSWNNGTSPCRWKGIQCDKSKSISTINLENFGLKGTLHSLSFSSFPNLISINIYNNLFNGTIPPQIANMSKVNSLNMSSNLFDGSIPKELWTLSSLQSLDLSLCHLSGSIPGSISNLANLSFLDLSDNHNLSGQIPPEIGKLNKLVFLGIGNNQISGSIPQEIGMLTKLEYLELSRNTLSGTIPSTIANMSSLNRLYLANNTLFGPIPASMWNMSTLSWLNLYNNQLSGSIPASIENLVNLELLEIEKNHFSGSIPSTIGNMTKLTWIFLRHNNFSGEIPSSIGNLINLITLALQGNNLSGAIPDTVGKLKSLFSLELSANKLSGSIPQVINNLTNMVYFLVEENDLSGHLPPQICLGRSLGYLMAGNNHFSGPIPSSLKNCSNLARIRLEYNHLEGDITQDFGIYPNLKFIDLSDNKLYGQISPDWGKCQNLENLIISNNNISGGIPSEIGELTNLGRLHLFSNQLTGKIPRELGNMKSLLEFKISDNHFSGNIPAEIGLLHDLQILHLGGNELSGNIPRQVVQLPNLLELNLSNNKLQGSIPSDFRSSQPLYSLDLSGNMLHGQIPIVLGELKQLKLLNLSHNNLSGTIPSSFNGMSSLISVNISYNQLEGPLPDNNRAFQNATIESLKNNKGLCGNITGLVPCPSSSPSRKSHKVMLLVLLVIFGVLVLVLCMAAVSLYFLCRSARNKDNSAKEVQQVEEQFSIWSHDGKMAFETIIEATNNFDDKHLIGIGGQGSVYRAELPSGMVVAVKKLHTESDAEDKSNLKAFENEIEALTEMRHRNIIKLYGFCQHSRFSFLVYEFLEGGSLDQVFGNEAKASAFDWMKRVNVVKGVANALSYMHHDCKPPMVHRDISSKNILLDSEYEAHVSDFGTAKFLKPDSNWTTLAVTYGYGAPELAQTMEVTEKCDVYSFGVLCLEILIGKHPGDLINSLLSPSTASITYNLLLVDVIDHRPPYPKNSIVGEIMWITKWALECLSQSPQFRPTMHQVSKELMMGKAPLPDDQFPMIRIGQLNEEWETPLI 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03124 1075 SMART LRR_typ_2 504 528 IPR003591 -
Aip04g03124 1075 SMART LRR_typ_2 143 167 IPR003591 -
Aip04g03124 1075 SMART LRR_typ_2 312 336 IPR003591 -
Aip04g03124 1075 SMART LRR_typ_2 264 288 IPR003591 -
Aip04g03124 1075 SMART LRR_typ_2 216 240 IPR003591 -
Aip04g03124 1075 SMART LRR_typ_2 360 384 IPR003591 -
Aip04g03124 1075 SMART LRR_typ_2 624 647 IPR003591 -
Aip04g03124 1075 SMART LRR_typ_2 576 599 IPR003591 -
Aip04g03124 1075 Gene3D Ribonuclease Inhibitor 405 705 IPR032675 -
Aip04g03124 1075 Gene3D Ribonuclease Inhibitor 183 237 IPR032675 -
Aip04g03124 1075 Gene3D Ribonuclease Inhibitor 238 311 IPR032675 -
Aip04g03124 1075 Gene3D Ribonuclease Inhibitor 312 404 IPR032675 -
Aip04g03124 1075 Gene3D Phosphorylase Kinase; domain 1 735 855 - -
Aip04g03124 1075 ProSitePatterns Tyrosine protein kinases specific active-site signature. 901 913 IPR008266 GO:0004672|GO:0006468
Aip04g03124 1075 SUPERFAMILY Protein kinase-like (PK-like) 756 1046 IPR011009 -
Aip04g03124 1075 Gene3D Ribonuclease Inhibitor 28 182 IPR032675 -
Aip04g03124 1075 SUPERFAMILY RNI-like 76 398 - -
Aip04g03124 1075 PANTHER LRR RECEPTOR-LIKE KINASE 155 244 - -
Aip04g03124 1075 PANTHER LRR RECEPTOR-LIKE KINASE 244 1066 - -
Aip04g03124 1075 PANTHER LRR RECEPTOR-LIKE KINASE 10 172 - -
Aip04g03124 1075 ProSiteProfiles Protein kinase domain profile. 776 1048 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g03124 1075 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 244 1066 - -
Aip04g03124 1075 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 10 172 - -
Aip04g03124 1075 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 155 244 - -
Aip04g03124 1075 PRINTS Leucine-rich repeat signature 219 232 - -
Aip04g03124 1075 PRINTS Leucine-rich repeat signature 576 589 - -
Aip04g03124 1075 Gene3D Transferase(Phosphotransferase) domain 1 856 1053 - -
Aip04g03124 1075 Pfam Leucine rich repeat 603 661 IPR001611 GO:0005515
Aip04g03124 1075 Pfam Leucine rich repeat 314 373 IPR001611 GO:0005515
Aip04g03124 1075 Pfam Leucine rich repeat 218 277 IPR001611 GO:0005515
Aip04g03124 1075 Pfam Leucine rich repeat N-terminal domain 31 68 IPR013210 -
Aip04g03124 1075 SUPERFAMILY RNI-like 305 665 - -
Aip04g03124 1075 Pfam Protein kinase domain 777 1044 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03124 Aip-Chr4 124623737 124627300 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03124 31 948 Receptor kinase-like Gene Family AT4G08850 44.409 0.0 731
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Aip04g03124 Pkinase 4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03124 - - aip:107635237 1461.05