Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03116 ATGGTACCATTATTGTCTCAAACTATGTTCATCACATTCATCATGTGTATGATTCTAACACTCCCTTCAACCCAAGTTGCTGGAGATAATGAAGATAGTGAAGCAAATGCTCTCCTGAAATGGAGATCTACCCTTGACAACCATAGTCAAAGTCTTCTATCATCTTGGAACAGCACTACTAGTCCATGCAAATTTGAAGGAATTCAATGTGATAATAATAAGTCAAACTCTGTCTCCACCTTAATTCTTGCAAATTATGGACTTAAAGGTACACTCCATGGACTAAACTTTTCTTCATTTCCCAACCTTGTTAGCATAGACATTAACAACAATTCCTTCTATGGTACCATTCCTCCACAAATTGGTAACTTGTCTAGAATTACCAATTTGAACATGTCTTATAATCGTTTCAATGGTTCAATTCCCAATGAAATGTGGGCACTGAGGTCATTACATAAGCTTGATCTTTCTAACTGCCTTCTCAATGGTAGCATATCTGCTAATATAGCAAACTTGACCAATTTGTCACACCTAGATTTAGGAGGAAATAATCTAGAAGGCAAAATTCCCCAAGAAATTGGGATGTTGAGGAACTTAGAGTATTTAGGAATTGCAGGAAATTCTCTTGTGACAGGATCAATTCCAAAGGAGATTGGAATGTTAACAAACCTGAGGTTCCTTGATTTGTCATATTGTCCTCTCTCTGGCACTATCCCTTCAGAAATTGGAAAATTGACCCATTTGACTTTTCTTCAATTCATTCAAAACAACCTCTTTGGTCCAATTCCACCCTCCATTTGGAACTTGACTAACTTGACTAACCTTTTACTTTCCACCAATAATTTTTCTGGTCCAATCCCAAGTTCAGTTGGGAAATTGGTTAATCTTGAAATGCTTGATCTGTCTCAAACTCAAATGTCTGGTCCTATTCCTGATTCTATTGGAAACTTGACAAAGCTCACCACATTGTACTTGTACCAAAGCAAATTCTCAGGAGAAATTCCTTCAACTATAGGAAACTTGGTCAATTTGAATGTTCTTGTCCTTGCAGAGAACAATTTCTCTGGTCCTATTCCTTCAACTTTAGGTAACTTAATTAGGCTCACTGATCTTCAATTAGCCACAAACAAGTTCAATGGTAGCATTCCAGAGGAAATGAATAATGTCATAAACTTGGGAAATTTGCAGCTATCTGAGAACAATTTTGTTGGTAGTTTGCCATCACAAATATGCTTAGGTGGTGCATTAACCAACTTCAGTGCTGATCATAACAATTTCAATGGTCCAGTACCAAGAACCTTGAAGAATTGCTCTAGTATCCTTAGAATAAGGCTTGATTCAAACCACATTGAAGGTAACATAACAGAAGATTTTGGTGTATATCCAAATTTGGACTACATCAATCTCAGTGGCAACAAGTTTTATGGCCACATTTCTCCAAACTGGGGAAAATGTCCTAAACTTACTAGTCTTATAATTGGAAGCAACAATGTCACTGGTGTTATACCATTGGAACTTGTTGAGGCAACCAATTTAGGTATGCTCGATCTTTCATCGAATCAGTTGGTTGGAAAAGTTCCCAAGGAACTTGGCAAGTTGAAGAATCTAGTCCAAGTCAAAATTGGCAACAACCTTCTTTCAGGAAATGTTCCAACAGAAATTGGACAGCTTCAGAGTCTTGAGATCTTGAATCTTGGAGGAAACGAGTTGAACGGCGCTATTCCAAAAGAAGTTGTGGATTTACAGAAGCTAAGGGAGCTGAATTTGAGCAAGAACAAGCTTGGTGGAAGCATTCCCTCTGTGTTTGGCCAATCAATGGTATCTCTTGATCTCAGTGGAAATTCATTGGATGGAACAATACCAACAAGCCTTGGAGGGTTACAACACTTGCAAGTGTTGGATTTGTCACATAACAATCTTTCAGGTACTATTCCATCAAAATTCAGCCTGACATTGGAATTTGTGAACATGTCAGATAACCATCTTGAAGGGCCAATTCCAAATTTTCCTGCTTTTCTCAATGCTAGTTCATTCAAGAACAACAAAGGTTTGTGTGGGAATATCAAAGGATTGGTTCAATGCTCAACCAACCTCAAAAAGAGCAGCAAAAAACACATCTTATTGTTGGTATTAATCATTACTTTGGTGAGTCTAGCAATGGTTCTTTGTGGGGTTGGAATTGCAATGTACTTTCTTTTCAGAAGTAAAAGGAAATTGAGAAACCAAAGTGAAGTCCAAGCCAAAGAAGGAAGAGTTGAACCAGACTTTACAATATGGAGCTATGATGGGAAAATCATGTTTGAGAACATCATTGATGCTACTAAGAATTTTGATGATTACTATCTCATTGGTGTTGGAAGCCAAGGACATGTTTACAAAGCTGAATTGCCTTCAGGACAAGTTGTTGCTGTGAAGAAGCTTCATAATGTGGTAGTAACTGATGGAGAAGTTTCAAGAACAAAGGCTTTTACAACTGAAGTTCAAGCATTGACACAGATAAAGCACAGGAACATCATAAAGCTCTATGGATTCTGTTCACATTCACAGTTCTCATTTCTTGTTTATGAGTTCTTGGATGGTGGAAGTTTGGATCAAATACTAAGCAATGAGACACATGCTGCTGAATTTGATTGGGATAAGAGGGTGAATGTTGTTAAGGGCGTCGCGAATGCTTTGTCTTACATGCATCATGATTGTTCGCCTTCTATAGTTCATCGCGATATTTCGAGCAAGAATGTTCTGTTGGATTCAGGGTATGAAGCTCACGTTTCAGATTTTGGGACTGCTAAGTTTCTCAAGCCTGGTTCATATAGTTGGACAACATTTGCTGGTACTTTTGGCTATGCTGCTCCAGAACTTGCACAAACTATGGAAGTGAATGAGAAATGTGATGTGTATAGTTTTGGAGTACTAGCTTTGGAGATTATCATGGGAAAGCACCCTGGGGATCTCATTTCATCATTAATGTCAACATCAACAGCATCAATGGTCAATGATTTGTTACTAATTGATATCTTAGATCAAAGGCTTCCTCAACCCAACACCAAGAGTCCAATTGTTGAGGAGGTGATCTTGGTTGCAAGGTTGGCATTTTCTTGCTTGACAACAAGCCCACGTTCTCGTCCAACAATGGATCAAGTTTCTAAGGCCCTTGTAATAGGAAGATCCACTTTGGTGGACCAATTTCCAATGATCAGAGTTGGACAACTATACTGA 3216 0.3831 MVPLLSQTMFITFIMCMILTLPSTQVAGDNEDSEANALLKWRSTLDNHSQSLLSSWNSTTSPCKFEGIQCDNNKSNSVSTLILANYGLKGTLHGLNFSSFPNLVSIDINNNSFYGTIPPQIGNLSRITNLNMSYNRFNGSIPNEMWALRSLHKLDLSNCLLNGSISANIANLTNLSHLDLGGNNLEGKIPQEIGMLRNLEYLGIAGNSLVTGSIPKEIGMLTNLRFLDLSYCPLSGTIPSEIGKLTHLTFLQFIQNNLFGPIPPSIWNLTNLTNLLLSTNNFSGPIPSSVGKLVNLEMLDLSQTQMSGPIPDSIGNLTKLTTLYLYQSKFSGEIPSTIGNLVNLNVLVLAENNFSGPIPSTLGNLIRLTDLQLATNKFNGSIPEEMNNVINLGNLQLSENNFVGSLPSQICLGGALTNFSADHNNFNGPVPRTLKNCSSILRIRLDSNHIEGNITEDFGVYPNLDYINLSGNKFYGHISPNWGKCPKLTSLIIGSNNVTGVIPLELVEATNLGMLDLSSNQLVGKVPKELGKLKNLVQVKIGNNLLSGNVPTEIGQLQSLEILNLGGNELNGAIPKEVVDLQKLRELNLSKNKLGGSIPSVFGQSMVSLDLSGNSLDGTIPTSLGGLQHLQVLDLSHNNLSGTIPSKFSLTLEFVNMSDNHLEGPIPNFPAFLNASSFKNNKGLCGNIKGLVQCSTNLKKSSKKHILLLVLIITLVSLAMVLCGVGIAMYFLFRSKRKLRNQSEVQAKEGRVEPDFTIWSYDGKIMFENIIDATKNFDDYYLIGVGSQGHVYKAELPSGQVVAVKKLHNVVVTDGEVSRTKAFTTEVQALTQIKHRNIIKLYGFCSHSQFSFLVYEFLDGGSLDQILSNETHAAEFDWDKRVNVVKGVANALSYMHHDCSPSIVHRDISSKNVLLDSGYEAHVSDFGTAKFLKPGSYSWTTFAGTFGYAAPELAQTMEVNEKCDVYSFGVLALEIIMGKHPGDLISSLMSTSTASMVNDLLLIDILDQRLPQPNTKSPIVEEVILVARLAFSCLTTSPRSRPTMDQVSKALVIGRSTLVDQFPMIRVGQLY 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03116 1071 Pfam Leucine rich repeat 606 662 IPR001611 GO:0005515
Aip04g03116 1071 Pfam Leucine Rich Repeat 174 193 IPR001611 GO:0005515
Aip04g03116 1071 Pfam Leucine Rich Repeat 223 245 IPR001611 GO:0005515
Aip04g03116 1071 Pfam Protein kinase domain 781 1049 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g03116 1071 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 175 256 - -
Aip04g03116 1071 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 15 177 - -
Aip04g03116 1071 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 253 1070 - -
Aip04g03116 1071 ProSitePatterns Tyrosine protein kinases specific active-site signature. 903 915 IPR008266 GO:0004672|GO:0006468
Aip04g03116 1071 Gene3D Ribonuclease Inhibitor 190 287 IPR032675 -
Aip04g03116 1071 Gene3D Ribonuclease Inhibitor 288 390 IPR032675 -
Aip04g03116 1071 Gene3D Ribonuclease Inhibitor 31 189 IPR032675 -
Aip04g03116 1071 SMART LRR_typ_2 389 413 IPR003591 -
Aip04g03116 1071 SMART LRR_typ_2 557 580 IPR003591 -
Aip04g03116 1071 SMART LRR_typ_2 341 365 IPR003591 -
Aip04g03116 1071 SMART LRR_typ_2 581 605 IPR003591 -
Aip04g03116 1071 SMART LRR_typ_2 221 245 IPR003591 -
Aip04g03116 1071 SMART LRR_typ_2 269 293 IPR003591 -
Aip04g03116 1071 SMART LRR_typ_2 172 196 IPR003591 -
Aip04g03116 1071 SMART LRR_typ_2 100 124 IPR003591 -
Aip04g03116 1071 SMART LRR_typ_2 627 650 IPR003591 -
Aip04g03116 1071 Gene3D Ribonuclease Inhibitor 391 697 IPR032675 -
Aip04g03116 1071 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Aip04g03116 1071 Gene3D Transferase(Phosphotransferase) domain 1 858 1058 - -
Aip04g03116 1071 Gene3D Phosphorylase Kinase; domain 1 738 857 - -
Aip04g03116 1071 SUPERFAMILY L domain-like 381 478 - -
Aip04g03116 1071 PRINTS Leucine-rich repeat signature 606 619 - -
Aip04g03116 1071 PRINTS Leucine-rich repeat signature 627 640 - -
Aip04g03116 1071 SUPERFAMILY L domain-like 55 312 - -
Aip04g03116 1071 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 253 1070 - -
Aip04g03116 1071 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 15 177 - -
Aip04g03116 1071 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 175 256 - -
Aip04g03116 1071 SUPERFAMILY RNI-like 227 664 - -
Aip04g03116 1071 ProSiteProfiles Leucine-rich repeat profile. 629 651 IPR001611 GO:0005515
Aip04g03116 1071 ProSiteProfiles Protein kinase domain profile. 777 1058 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g03116 1071 SUPERFAMILY Protein kinase-like (PK-like) 759 1051 IPR011009 -
Aip04g03116 1071 Pfam Leucine Rich repeat 582 596 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03116 Aip-Chr4 124472153 124475889 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03116 34 951 Receptor kinase-like Gene Family AT4G08850 42.827 0.0 707
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Aip04g03116 Pkinase 2.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03116 - - gmx:100814634 1217.6