Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03109 ATGTTCTGTGCCATGAAAAAAGATAGAAATGCACTTTCAGCATTTATGCAGGGGATTGAAGATCCACACAAGTTTCTCTCATCTAGGTCCACTGAACAAGATTGCTGCAAATGGTTTGGAGTTGAATGCAACAACATCACAGGGAATGATTCCACTGAGCACCCAACTTCAGAGCTTTTTGGAGCTCCCCTTCTCAAGAACTGCACACAAGAGAAAGACCACAACAGATCCAAACAGAAGGAAGACAGAGATAGTGATGAGTTTGGAGCCTCTTTCCTCATTGGCATGGGAGTTGGCTTTGCTTCTTGTTTCTGGGTAGTTCGTAGCACCATTTTCTTCATCAAGAGATGCAGGCATGCTTATTTTCGGATGCTTGATAACCTCTATATCTTTGTTGTGCTTCAAGATCAGTTCAGTTCAGCACACACAAAAATGCTTCTCTCTTTACACCTGCCTTCACCATCCCCTTCTTCTTACCACACTCCTTCCAGAACCTTCCACAACAAACCCCACTACATCAAGTTCCGTACATCTTACCGCCAAAATCTCCGTTACCTCCAACACCTAACCGTTATCCCGCCCGACTCCCTCCCTGACTCCGACACTCTCCACCGCATATTCGCCACCGTTAACCTCCTCAAATCCCACTCCCTCTCCGACTCCGACATCCCCCGCATCGCCGCTGCTGCCCCCTCCCTCTTCTCCCCCTCCTCCGCCGCCTTCTCCCCCGATAACATATCCGCCGTGTTCCACTTCCTCGCCACCGACGTCGCCGCCTCCTCCGCCGAGTCCCGCGGCCTCGTCCTGCGGTGCCCTCACCTACTCCTCTCCCCGCACCCCGACCTCTGCCTCCGCCCAACGCTCTACTTCCTCCGCGACGAGATCGGGCTCTCCGGTCTGAACCGGCCGACGAACAGGAACGCGCATCTGCTGAACACGCGCGTGGAGGATCTGCGCGTGAGGGTGGAGTTTTTGACGGAGGAGGTTGGGTTTGAGTATGAGGAGGCGGTTAGGGCGTTGGTACGGGTACCGGCTATATTCGGTTACGGTTTGGAAAGTAATTTGAGGCCGAAATTTGAGTATTTGGTTGGTGAGATGGGTAGGGATGTTGAAGAACTGAAAAAGTTTCCACACTACTTTGGGTTTAGCTTGCATAACAAAATTGTGCCAAGGCATTTACATTTGAAGCAAATGGGTGTTGTTGGTGTTCCTTTGAATAAGATGCTTATGTGGCGTGATGAAAGATTCTATGCAAAATGGAAGTGA 1266 0.5071 MFCAMKKDRNALSAFMQGIEDPHKFLSSRSTEQDCCKWFGVECNNITGNDSTEHPTSELFGAPLLKNCTQEKDHNRSKQKEDRDSDEFGASFLIGMGVGFASCFWVVRSTIFFIKRCRHAYFRMLDNLYIFVVLQDQFSSAHTKMLLSLHLPSPSPSSYHTPSRTFHNKPHYIKFRTSYRQNLRYLQHLTVIPPDSLPDSDTLHRIFATVNLLKSHSLSDSDIPRIAAAAPSLFSPSSAAFSPDNISAVFHFLATDVAASSAESRGLVLRCPHLLLSPHPDLCLRPTLYFLRDEIGLSGLNRPTNRNAHLLNTRVEDLRVRVEFLTEEVGFEYEEAVRALVRVPAIFGYGLESNLRPKFEYLVGEMGRDVEELKKFPHYFGFSLHNKIVPRHLHLKQMGVVGVPLNKMLMWRDERFYAKWK 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03109 421 Pfam Leucine rich repeat N-terminal domain 6 44 IPR013210 -
Aip04g03109 421 Pfam mTERF 245 416 IPR003690 GO:0003690|GO:0006355
Aip04g03109 421 PANTHER CGI-12 PROTEIN-RELATED 162 421 IPR003690 GO:0003690|GO:0006355
Aip04g03109 421 Gene3D Ribonuclease Inhibitor 5 70 IPR032675 -
Aip04g03109 421 PANTHER TRANSCRIPTION TERMINATION FACTOR MTEF1, CHLOROPLASTIC 162 421 - -
Aip04g03109 421 SMART mt_12 265 298 IPR003690 GO:0003690|GO:0006355
Aip04g03109 421 SMART mt_12 370 401 IPR003690 GO:0003690|GO:0006355
Aip04g03109 421 SMART mt_12 301 332 IPR003690 GO:0003690|GO:0006355
Aip04g03109 421 SMART mt_12 337 369 IPR003690 GO:0003690|GO:0006355
Aip04g03109 421 Gene3D Transcription termination factor 3, mitochondrial 194 421 IPR038538 -
Aip04g03109 421 Coils Coil 308 328 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Aip04g03109 mTERF 3.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03109 K15032 - gmx:100812333 301.212