Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03102 ATGCCGCAACGAACAGTGAAGAAAGGTGCTGCGGCGAAAAGAGCGAAGACCGCCCTTGAAAACAACAACCATACTGACAACCTTGGGCAAGAGCCTGAAACTGCGGAAGCGGTTGTGAATAATCATGAAGAAGAAGAAGAAGACATAGCTAATGATGAGAAAAGTGTTCTTTCGGATGAGAAGCTCGATGATGTGAAGAACAAAGAAGAGGAGGTTAAGGAGTCCATAGATGAATATGAAAAAGATGAACAGTTAGATTTTGAGGATAACTATCCTGAGTATGAACCTTTAGAGGACTATAACGGAGTTGACTATGATGAAAAGGAAACTGAACAAGACGAGCATCAGGAGGTTAGAGATGAAGTAGAGGAAGAGTGTGAAGTAGTTGCAGGAGAAGATGATATTTCAGGTGATGAAGAAATTGAATACGTTTATGAAGAAGTTGAGGTTGATGAGGATGATGAGCATAATGATGAGGAACATGATCATTCGTCACGGATGGCTGATGCGGAGCAAAAGGAGCACCCTGAAGGTGTAAATAAGAGACACAAGCAGAAGGAATTTGAAGTATTTGTCGGAGGCTTATATAAGGATGCTACTGAGGAGGATCTGAGGAAGGTTTTTGGTGAAGTTGGGGTAATTACTGAAGTCAGGCTGATGATGAATCCTCATACTAAAAAGAACAGAGGATTTGCATTCTTGCATTTTGAAACTATTGAACAAGCTAAAAAAGCTGCAACAGAGCTGAAAAATCCAGTGATTAATGGCAAACAATGCCGTGTTTCTCCCGTTCAAGACAATGATACCATCTATTTGGGTAATATATGCAAGACATGGAAATTAGAAGCACTAAAAGATAAGCTGAGACATTATGGGGTTGGAAATTTTGAGAACCTGACTTTAGTAGAAGACAGTAACAATGAAGGAATGAACCGTGGATTTGCATTTTTGGATTTTTCATCTCGTTCTGAGGCTAGGAAAGCCTATACACAACTGCAGAAGAGAGATGTTGTGTTTGGAGTTGATAAGCCAGCAGAGATTTCATTTACAGACTCCTTTATTGACCCAGTTGATGATATTATGGCACAGGTTAAAACTGTATTTATAGATTCCCTGCCTCCTTCATGGGATGAAGATTATGTCCGAGATCTTCTTAAGAAATATGGGGAGATCGAAAAGATTGAGCTTGCTAAAAACATGCCAGCTGCCAGTAGGAAGGATTTTGGATTTGTTACGTTTGGTACACATGCTGCTGCCGTGGAATGTGCTGGTAGCATTACCAGCTCAGGATTGGGTGAAGGTGACAAGAAGGCAAAAGTTAAGGCTAGATTGTCAAGGCCTCTTCGGAAAGGCAGTAGAAAACATGTTAGCCATGCGGCCTACAGTTCTGGTCGCAATTCTGGAATCTTAGCAAGGCCTTCAAGAGCTAGACCTGCACCACGTAGTCTTCCTGCTCGCATGGTAAGACGAATTGAAAGTCATGTTCCACCTGTTAGGCCTTTTAGTGTGATGGATAGACGGCCTGTTAGTGTGAGAGATAGACGACCTGTTATGTCTATGTCACTGAGATCAAGGCCAGTGTCTCATCTAGCCAGATCCTCTGAGAGGAGATTGAGTACATCTGGATATCCAAAAAGTAGCATGAAGAGAGACTATGGTCTATGTGAGGAATTGCCACCTCCAAGAAGTAGAGTTGCTGTAGATTATGGGTCTAGGATGTCCTCTCAAAAACACCTCTCCTACAGGGATTATCCAGCCCATGGCTCTCGCTACCCTGAGCTGCGTAAAGGTACGTCTCGTACTTCAGCAGCTGCACCTATGAGAAGTTATGTGGATGATGGCTATGGCCAAAGATTTGAGAGGCCTCCTCTTTCTTCTTCCCATTTTAATCACCGTGAAGGACACTCCCGTGATTATGAGACACTGTCGGGTTCGAAACGTACTTATTCTGTCATAGATGATGCCCCTCCTCGATATGCTGATACTGGTGCTCGCCAGTCAAGATCACGTTTGGACTATGAGTATGGGGGTAGTACTTCACAATATGGAGATGCCTATGGCGATAGACTTGGAAGATCTAGTCTGGGCTATAGTAATGGCAGGAGTTCTATATCTACTCGAGACACTCATGGAATGTATAGCAGTCGGCAGAGCACAAGTTACAGTGCAGGTTCTTTTGGCGGAAGTGATCGTGATTTGTACTCAGCAAGTTATGGTGGTGATTACATATCTCGTGGCAGTGATGCTGGTGGCAGATCATATTCGTCAATGTATTCCAGCAGGGGTGTGGGTGGTAGTAGCAGCTATATGAGTGGTAGTAGATCTAGGTCGTATTACTGA 2340 0.4325 MPQRTVKKGAAAKRAKTALENNNHTDNLGQEPETAEAVVNNHEEEEEDIANDEKSVLSDEKLDDVKNKEEEVKESIDEYEKDEQLDFEDNYPEYEPLEDYNGVDYDEKETEQDEHQEVRDEVEEECEVVAGEDDISGDEEIEYVYEEVEVDEDDEHNDEEHDHSSRMADAEQKEHPEGVNKRHKQKEFEVFVGGLYKDATEEDLRKVFGEVGVITEVRLMMNPHTKKNRGFAFLHFETIEQAKKAATELKNPVINGKQCRVSPVQDNDTIYLGNICKTWKLEALKDKLRHYGVGNFENLTLVEDSNNEGMNRGFAFLDFSSRSEARKAYTQLQKRDVVFGVDKPAEISFTDSFIDPVDDIMAQVKTVFIDSLPPSWDEDYVRDLLKKYGEIEKIELAKNMPAASRKDFGFVTFGTHAAAVECAGSITSSGLGEGDKKAKVKARLSRPLRKGSRKHVSHAAYSSGRNSGILARPSRARPAPRSLPARMVRRIESHVPPVRPFSVMDRRPVSVRDRRPVMSMSLRSRPVSHLARSSERRLSTSGYPKSSMKRDYGLCEELPPPRSRVAVDYGSRMSSQKHLSYRDYPAHGSRYPELRKGTSRTSAAAPMRSYVDDGYGQRFERPPLSSSHFNHREGHSRDYETLSGSKRTYSVIDDAPPRYADTGARQSRSRLDYEYGGSTSQYGDAYGDRLGRSSLGYSNGRSSISTRDTHGMYSSRQSTSYSAGSFGGSDRDLYSASYGGDYISRGSDAGGRSYSSMYSSRGVGGSSSYMSGSRSRSYY 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03102 779 Gene3D - 267 351 IPR012677 -
Aip04g03102 779 MobiDBLite consensus disorder prediction 150 182 - -
Aip04g03102 779 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 266 IPR000504 GO:0003723
Aip04g03102 779 SUPERFAMILY RNA-binding domain, RBD 359 464 IPR035979 GO:0003676
Aip04g03102 779 MobiDBLite consensus disorder prediction 621 726 - -
Aip04g03102 779 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 190 259 IPR000504 GO:0003723
Aip04g03102 779 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 270 336 IPR000504 GO:0003723
Aip04g03102 779 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 367 422 IPR000504 GO:0003723
Aip04g03102 779 SUPERFAMILY RNA-binding domain, RBD 189 335 IPR035979 GO:0003676
Aip04g03102 779 Coils Coil 35 55 - -
Aip04g03102 779 MobiDBLite consensus disorder prediction 54 80 - -
Aip04g03102 779 Coils Coil 58 85 - -
Aip04g03102 779 MobiDBLite consensus disorder prediction 749 779 - -
Aip04g03102 779 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 779 - -
Aip04g03102 779 MobiDBLite consensus disorder prediction 81 107 - -
Aip04g03102 779 MobiDBLite consensus disorder prediction 744 779 - -
Aip04g03102 779 Coils Coil 105 125 - -
Aip04g03102 779 MobiDBLite consensus disorder prediction 625 642 - -
Aip04g03102 779 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 352 IPR000504 GO:0003723
Aip04g03102 779 MobiDBLite consensus disorder prediction 695 726 - -
Aip04g03102 779 MobiDBLite consensus disorder prediction 159 182 - -
Aip04g03102 779 Gene3D - 357 475 IPR012677 -
Aip04g03102 779 SMART rrm1_1 269 348 IPR000504 GO:0003723
Aip04g03102 779 SMART rrm1_1 189 262 IPR000504 GO:0003723
Aip04g03102 779 SMART rrm1_1 366 441 IPR000504 GO:0003723
Aip04g03102 779 MobiDBLite consensus disorder prediction 445 481 - -
Aip04g03102 779 MobiDBLite consensus disorder prediction 522 559 - -
Aip04g03102 779 MobiDBLite consensus disorder prediction 1 127 - -
Aip04g03102 779 CDD RRM_SF 367 422 - -
Aip04g03102 779 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 365 447 IPR000504 GO:0003723
Aip04g03102 779 PANTHER RNA RECOGNITION MOTIF 1 779 - -
Aip04g03102 779 MobiDBLite consensus disorder prediction 582 603 - -
Aip04g03102 779 CDD RRM_SF 270 337 - -
Aip04g03102 779 Gene3D - 104 263 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03102 Aip-Chr4 124328145 124334133 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03102 190 413 Eukaryotic Initiation Factors Gene Family AT4G34110 23.750 1.37e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03102 - - gmx:100808583 904.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g00771 09 9740510 9746756 Aip04g03102 04 124328145 124334133 PCT