Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03086 ATGAGAAGAGAGCAGCACATGCAATTCTTTAAATGTGAAACTATCCGTGACCCAACAACACCACCATCAACATCACACTCTCTTCTTCTTCTTCACAGATCAAACACACTCACACACCTTCCCTCTCTCTTCTTCGATCTCTCTGTTCCAAGGATGGGTGTGGCTCAAAACATTCCTGACATGGAGGAGGAGGGAACCTTGGAGATTGGAATGGAATACAGAACTGTGTCTGGTGTTGCTGGACCGTTGGTTATTCTTGATAAAGTTAAGGGACCAAAATTTCAAGAGATTGTTAATATTCGGTTAGGGGATGGAACTTCTCGGCGTGGACAAGTTCTAGAAGTTGATGGTGAGAAAGCTGTTGTTCAGGTCTTCGAAGGTACCTCTGGGATTGACAATAAGTTTACAACTGTGCAATTTACTGGAGAGGTATTGAAAACTCCTGTTTCGCTTGACATGCTTGGCCGCATATTTAATGGCTCGGGAAAACCCATTGATAATGGTCCACCCATATTACCAGAGGCTTACTTGGACATATCAGGAAGTTCCATCAATCCTAGTGAGAGAACCTATCCAGAGGAGATGATACAAACCGGAATTTCTACAATTGATGTCATGAATTCTATTGCTAGAGGTCAAAAGATCCCTCTATTCTCAGCTGCTGGTCTCCCCCATAATGAAATTGCTGCACAGATATGTCGTCAGGCTGGCTTAGTCAAGCGATTAGAGAAATCTGATAATCTTCTTGAGGGTGGAGAAGACGACAATTTTGCCATCGTGTTTGCTGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAGGAAGCCAATGATCCTACAATCGAGCGTATCATCACCCCTCGTATTGCTCTTACTACTGCTGAATATCTGGCTTATGAATGTGGCAAGCATGTTCTTGTGATACTCACAGATATGAGTTCATATGCCGATGCTCTTCGTGAGGTATCTGCTGCCCGAGAAGAAGTGCCAGGACGACGTGGTTATCCCGGTTACATGTACACAGATCTTGCAACAATATACGAACGTGCTGGAAGAATCGAGGGGCGAAAAGGCTCTATTACTCAGATTCCTATTCTAACTATGCCAAATGATGATATCACGCATCCAACTCCTGATCTTACAGGATACATTACCGAGGGACAGATATATATTGACAGACAGCTGCATAACAGGCAGATATATCCACCAATCAATGTCCTTCCATCACTGTCTCGATTGATGAAGAGTGCCATCGGCGAGGGAATGACTCGAAAGGATCATTCTGATGTATCCAACCAGCTCTATGCAAATTATGCCATAGGAAAGGATGTTCAGGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCATCAGAGGACTTGCTATATCTGGAATTTCTGGACAAATTCGAGCGAAAGTTTGTGACGCAAGGAGCTTATGACACCCGCAACATCTTCCAGTCACTAGATCTTGCGTGGACCTTGCTTCGGATCTTTCCCCGGGAGCTTCTTCACCGTATACCGGCCAAGACCCTCGACCAGTTCTACAGCCGAGATTCCGGTAATTGA 1584 0.4451 MRREQHMQFFKCETIRDPTTPPSTSHSLLLLHRSNTLTHLPSLFFDLSVPRMGVAQNIPDMEEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGTSRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNLLEGGEDDNFAIVFAAMGVNMETAQFFKRDFEEANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVTQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRDSGN 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03086 527 CDD ATP-synt_V_A-type_beta_N 72 143 - -
Aip04g03086 527 PANTHER V-TYPE PROTON ATPASE SUBUNIT B1-RELATED 54 527 - -
Aip04g03086 527 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 199 416 IPR000194 GO:0005524
Aip04g03086 527 Gene3D - 81 526 - -
Aip04g03086 527 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 54 527 IPR022879 -
Aip04g03086 527 Pfam ATP synthase alpha/beta family, beta-barrel domain 76 142 IPR004100 GO:0046034|GO:1902600
Aip04g03086 527 TIGRFAM V-ATPase_V1_B: V-type ATPase, B subunit 72 525 IPR005723 GO:0033180|GO:0046961|GO:1902600
Aip04g03086 527 ProSitePatterns ATP synthase alpha and beta subunits signature. 407 416 IPR020003 GO:0005524
Aip04g03086 527 CDD ATP-synt_V_A-type_beta_C 426 520 - -
Aip04g03086 527 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 422 IPR027417 -
Aip04g03086 527 PIRSF V-ATPsynth_beta/V-ATPase_B 63 527 IPR022879 -
Aip04g03086 527 Hamap V-type ATP synthase beta chain [atpB]. 70 525 IPR022879 -
Aip04g03086 527 CDD V_A-ATPase_B 144 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03086 Aip-Chr4 124138042 124145619 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03086 51 527 Primary Pumps ATPases(2) AT4G38510 93.673 0.0 933
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03086 K02147 - gmx:100791429 915.99