Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03068 ATGGTTTCGAGTAGCCGAATTTTCGGTGGACGTGGTTGTGTTGTTGTTCTAGCTGTTTGTTTCTTGCTGCTTATTAGTTGTGGCAAGATACATGGTACTGTTACTGATATCTTCTGCTTGAGGAGTATTAAAGCTTCGCTGCGTGACCCGGATCACTATTTACAGTCATGGGATTTCAACAACAAAACAGAAGGGTTTATCTGCAGGTTCACCGGGGTTGAGTGTTGGCATCCTGATGAGAACAGAGTCTTGAATATCAAGTTATCGAACATGGGACTGAAAGGGTCATTCCCTCGAGGCCTTGTGAATTGCTCGAGCTTAACAGGGCTAGATCTTTCGAACAACAAGCTTTCTCAGCCCATTCCGGAGGATATATCTACTATTATTAATTGGGTGACAAAACTTGATCTGTCGTCGAATGATTTTGATGGTGAGATACCTGCTTCGCTTGCTAATTGTAGCTTCCTTAATGACCTCAAACTTGACCAAAACAGGCTCACCGGTCAAATTCCCGTGCAAATAGGTCAGCTTCCGAGGCTTAAGTCATTTAGTGTGTCCAATAATCTTTTGACTGGGCAAGTTCCGGGGTTTAAGAAAGGTGTAGTGACTGCCGAGAGCTTCGCGAATAATCCAGGCCTCTGTGGCCCTCCTTTGGATTTTTGCCAGAGTAACCCTTCCAACAGCAACACTGCTGTTATAGCTGGAGCAGCCGTTGGTGGCGTGAGTTTTGCTGCATTGGTGGTTGGTGTTGCAATGTTCTTCTATGTGCGCCGTGTTTCTATCAGGAAGAAGGAAGAGGACCCTGAAGGAAACAAATGGGCAAAGAGTATAAAGGGTACCAAACAAATAAAGGTTTCTATGTTTGAGAAGACACTTACAAAAGTTAAATTGAGTGATCTCATGAAGGCTACAAATGACTTCAGCAAAAGCAACATTATTGGGACAGGAAGAACTGGAACCATTTACAAAGCTGTTCTTGATGATGGCACATCACTCATGGTGAAGAGATTGCAACAATCTCAACACTCAGAGAAAGAATTTAAATCTGAGATGGCTACGCTAGGGGCAGTCCAGCACCGGAACTTGGTTCCCCTCTTAGGCTTTTGTTCTGCCAAAAAGGAGAGGCTTTTGGTCTATAAAAATATGCCAAATGGCACCCTCCATGATCAATTACATCATCGAGCCGATGAGAGCACCATGGAGTGGTCTTTAAGGCTCAAAATTGCAATTGGAGCAGCCAAAGGATTAGCATGGCTTCATCACAACTGCAATCCCCGGATCATACACCGAAACATAAGCTCTAAGTGCATCTTGTTGGATGCAGATTTTGAGCCGAAAATTTCCGATTTTGGCCTGGCTAGACTGATGAACCCCATCGACACGCATTTGAGTACTTTTGTGAATGGTGAGTTTGGGGATTTAGGCTATGTTGCTCCTGAGTACACAAGAACTTTGGTAGCCACGCCTAAGGGTGATGTTTATAGCTTTGGTGTTGTACTTCTTGAGTTGGTAACAGGCGAAAAACCTACTCACGTGGCGAAAGCTCCGGAAACTTTCAAAGGAAGCTTGGTAGAATGGATTCAGCAGCTCTCAAGTAACTCACAACTCCATGATGCCATTGACAAATCCCTAACCGGGCAGGGAGCCGATGATGAGCTTTTCCAATTCCTAAAGGTTGCATGCAACTGTGTTGTAGCAACCTCAAAGGAGAGGCCAACTTTGTTCGAAGTTTACCAGTTTCTAAGAGCCATTGGAAGTAAATATAATTTTACAACAGAGGATGAGATTTTGGTACCTACTGATACTGGTTATGCTGATAACTTAGAGGAGCTTATTGTGGCTAAAGAGGGAGGAAAGGATTGA 1863 0.4396 MVSSSRIFGGRGCVVVLAVCFLLLISCGKIHGTVTDIFCLRSIKASLRDPDHYLQSWDFNNKTEGFICRFTGVECWHPDENRVLNIKLSNMGLKGSFPRGLVNCSSLTGLDLSNNKLSQPIPEDISTIINWVTKLDLSSNDFDGEIPASLANCSFLNDLKLDQNRLTGQIPVQIGQLPRLKSFSVSNNLLTGQVPGFKKGVVTAESFANNPGLCGPPLDFCQSNPSNSNTAVIAGAAVGGVSFAALVVGVAMFFYVRRVSIRKKEEDPEGNKWAKSIKGTKQIKVSMFEKTLTKVKLSDLMKATNDFSKSNIIGTGRTGTIYKAVLDDGTSLMVKRLQQSQHSEKEFKSEMATLGAVQHRNLVPLLGFCSAKKERLLVYKNMPNGTLHDQLHHRADESTMEWSLRLKIAIGAAKGLAWLHHNCNPRIIHRNISSKCILLDADFEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYTRTLVATPKGDVYSFGVVLLELVTGEKPTHVAKAPETFKGSLVEWIQQLSSNSQLHDAIDKSLTGQGADDELFQFLKVACNCVVATSKERPTLFEVYQFLRAIGSKYNFTTEDEILVPTDTGYADNLEELIVAKEGGKD 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03068 620 Pfam Protein tyrosine and serine/threonine kinase 310 580 IPR001245 GO:0004672|GO:0006468
Aip04g03068 620 SUPERFAMILY L domain-like 35 200 - -
Aip04g03068 620 CDD STKc_IRAK 313 581 - -
Aip04g03068 620 PANTHER RECEPTOR-LIKE PROTEIN 55 10 596 - -
Aip04g03068 620 ProSiteProfiles Protein kinase domain profile. 307 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g03068 620 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Aip04g03068 620 Gene3D Ribonuclease Inhibitor 35 222 IPR032675 -
Aip04g03068 620 Gene3D Phosphorylase Kinase; domain 1 268 380 - -
Aip04g03068 620 CDD TM_EGFR-like 226 264 - -
Aip04g03068 620 Gene3D Transferase(Phosphotransferase) domain 1 382 600 - -
Aip04g03068 620 SUPERFAMILY Protein kinase-like (PK-like) 285 581 IPR011009 -
Aip04g03068 620 Pfam Leucine rich repeat N-terminal domain 36 76 IPR013210 -
Aip04g03068 620 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 10 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03068 Aip-Chr4 123793765 123797115 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03068 16 595 Receptor kinase-like Gene Family AT3G28450 46.167 0.0 529
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Aip04g03068 PK_Tyr_Ser-Thr 6.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03068 - - adu:107486093 1184.47