Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03066 ATGGAGAATTTATTCAAGAGTTGGATTTCTCGACATCTGGGAATGGAAGAAGAAGAAAATGATGATATGATCATCATGAACAACTACTCATTGAATGAAGAGCAAGAGTTCCTAATGAAAATCTTTAATGGCCGACCAGATTTCTCATCACCAGAAAGTAGCGAACATTATTATTATTATTCTTCCCCCAATAATAATAACAATAATAATAATGATCCTAATAATTGTGACACAAGCCCCAATAACAATAATAGTAGTGTATCATTTGAAGACACAAGAGTGCAAAAAAGTAAAAGCTCCAATTCTATTCCTTCTTCTACCTATCTATTATCATTTGAGCCTAATTCATTTAAAGGAAGAAGTAGAAGTGATGATGGGTTCGAATTATTTGAAGCAAGTATGAGTAAAAATGATGAAGATGCAACAACAAAAAAGCGCAAAGGAAAGACAGCAGATCACATAATAGCTGAGAGGAAAAGGAGGCAAGACCTAACAAGAAGCATCATCCAACTTTCAGCTACTATACCTGGCTTGAAGAAGATGGACAAAGCTCATGTAATTCGTGAATCTCTAAGTTACATAAAAGTTCTTCAAGATCGAGTTAAAGAGTTGGAGAACCAAATCAAAGATAGAAGAGTAGATTCAGCAATATTCATAGGAAGATCTCAAGACTCATCATCAACAGATAAAAGCACAATCAGCTATGAAATAACATCAGATAATAACAATGGTGGTGGTATTTATAATGAATTATCACTTGAGATTGAAGCAAAAGTCATGGAAAAAGAAGTTCTCATTAGAATCCAATGTGAGAAGCAAAAAAACAACATAATAATGCTCAAAATACATGCCTTTCTTGACAAGCTTCATCTCTCTATAGCAAGTAACAGTGTGTTACCATTTGGGACTTCTACTCTCGTAATAATTACCATTGTTGCTGAGATGGATAATGGTGGCAAATTCAGCATGACAATGGATGAACTAGTAAAAAGCCTCAGAGAAGATTTGATGGAGACAAACAATAATGCATGGTAG 1035 0.342 MENLFKSWISRHLGMEEEENDDMIIMNNYSLNEEQEFLMKIFNGRPDFSSPESSEHYYYYSSPNNNNNNNNDPNNCDTSPNNNNSSVSFEDTRVQKSKSSNSIPSSTYLLSFEPNSFKGRSRSDDGFELFEASMSKNDEDATTKKRKGKTADHIIAERKRRQDLTRSIIQLSATIPGLKKMDKAHVIRESLSYIKVLQDRVKELENQIKDRRVDSAIFIGRSQDSSSTDKSTISYEITSDNNNGGGIYNELSLEIEAKVMEKEVLIRIQCEKQKNNIIMLKIHAFLDKLHLSIASNSVLPFGTSTLVIITIVAEMDNGGKFSMTMDELVKSLREDLMETNNNAW 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03066 344 Coils Coil 187 214 - -
Aip04g03066 344 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 147 213 IPR036638 GO:0046983
Aip04g03066 344 MobiDBLite consensus disorder prediction 53 105 - -
Aip04g03066 344 Gene3D - 138 213 IPR036638 GO:0046983
Aip04g03066 344 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 148 197 IPR011598 GO:0046983
Aip04g03066 344 SMART finulus 154 203 IPR011598 GO:0046983
Aip04g03066 344 PANTHER BHLH TRANSCRIPTION FACTOR 7 341 - -
Aip04g03066 344 Pfam Helix-loop-helix DNA-binding domain 151 198 IPR011598 GO:0046983
Aip04g03066 344 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 7 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03066 Aip-Chr4 123748935 123751647 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03066 60 336 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 35.664 3.95e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip04g03066 HLH 1.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03066 - - adu:107486034 555.829