Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03060 ATGTTCTCCCTGTTCCTCCGCCGCCATTTCTTCTCCACCAAGCTCCCTACCCTCTCCAAGGTCCCCACGCGCCACAGAACCTTCGCTCTCCGTGAAGCTCAGAACGCCCTCACTGACTACCTTCATGCCACCAGGTGCTTGCCTTTTACCTATGCAGAGCACATTGGCAACAAAGCCCTTTGTTCCCTCATGAGTCTCATTGCAAAGGTAGATTTTTCAGCCCCTACTTTCTCTAAAAGCTTTCAGAAGTTCCTTAGGTACCACCCTATTAATGAATTCGAGGTCTTCTTCGAGAGCATAGGGATAGAGTACAGTATGGTGTCTGAGTTGTTGCCTCGTGACAAGGTGTTCTTTTCTGAAGATGTGATCCTCTTTGATGCTGCTTGCACTCTTTGTGATTTCGGGTTTCCCTGGGAGAAGTTGGGGTTGTTGTATATGGCAGAAAGTTCAATATTTGGCATGAATGCTGAACAGTTGAATAGAAGGCTTTGCGGATTTAAAGGGTTTGGTTTTGGTAGCGTTGAGGTTATTGGTATATGTTTGGCTTTCCCTTTTGTTTTACTTGAGGAAGGCCAAGTGAGAGCTGGAAGAATTGAGCGACTGTTAAGTGATCTGAAATTGATATTTTTGGATTTTGGGTTGGGAAGGTTTGTTGAGGGAGATGTGGATTCTTGGCATGAGATGTGTAGAAAATTAAGGGTGTTTTATGATTTAGATAGTCAGAAAGGGGAGTTAGGCGAACTAATCGGAAGGCATAAAAGTATATTTATCGAATATACAGAAGAAGAGTTGGTTAATAAAGTGGATTATTTCTGTAGATTTGGTGTGAAGAAGGATGAAGTGGCTCAGTTGATTTTACAGTGCCCGGAAATATTGAAACTGGATCTGGAGAAACCGGTATTCAATGTAATGAAGCTGTTGACACACTTTGGCCTTAGCAATGAAGATATAGAGGAAGTAAGTCGGAGTTATGGTCATGTTATGGGAACAAATAAAATGGCTAATCTTCCTAATGTAATGAAGGCTTTAGGCTTACAAGAGTGGTTCTTCAAGAAAATCAAGGATGGAAATCATATGTTGTTAGCAGATTATATCGCAAGATATCCTAAAGAAGAACAGGATCTAGATTATCAAGAAAGTTTAAGGATAATTAGAAGTTTAAAAACACGGGTTCATAATATCGGTAAATTAAATTTCTTGCTTGGCTTGGGCTTTGGAGAAAATACTTTGTCCATAAACCTTTTGAATCATCTTCATGGCACTAGTACTGAGCTGCACGAAAGATTCGATTGCCTCCTACGTTCAAAGATTGAATTCTCCCGGCTCTGTATGATGGTAAGAACAACCCCAAGGATTCTTAACCAAAATTCGGAAACCATTGAGCAAAAGGTGAATTTCTTCCACCAGGAAATGGGAACTACTTTAAATCATGTGGAAACTTTTCCAGCAATATTGTATTATCACTTAGAGGACCGGATTATACCTAGGTACAGATTCCATAAGTGGCTTTCAGGAAAAGGTCTGAGTTGTAAGAAATATTCTATTCGAAGTATGATTGCGAACAACGAAAAGAAATTTGTGGCTCGTGTCTTCAAAATTCATCCGGCTGCTCCAAAACATTGGTTTGAGCAATTCCGGCATGGTAAGTTGCCAGTGTAA 1659 0.4057 MFSLFLRRHFFSTKLPTLSKVPTRHRTFALREAQNALTDYLHATRCLPFTYAEHIGNKALCSLMSLIAKVDFSAPTFSKSFQKFLRYHPINEFEVFFESIGIEYSMVSELLPRDKVFFSEDVILFDAACTLCDFGFPWEKLGLLYMAESSIFGMNAEQLNRRLCGFKGFGFGSVEVIGICLAFPFVLLEEGQVRAGRIERLLSDLKLIFLDFGLGRFVEGDVDSWHEMCRKLRVFYDLDSQKGELGELIGRHKSIFIEYTEEELVNKVDYFCRFGVKKDEVAQLILQCPEILKLDLEKPVFNVMKLLTHFGLSNEDIEEVSRSYGHVMGTNKMANLPNVMKALGLQEWFFKKIKDGNHMLLADYIARYPKEEQDLDYQESLRIIRSLKTRVHNIGKLNFLLGLGFGENTLSINLLNHLHGTSTELHERFDCLLRSKIEFSRLCMMVRTTPRILNQNSETIEQKVNFFHQEMGTTLNHVETFPAILYYHLEDRIIPRYRFHKWLSGKGLSCKKYSIRSMIANNEKKFVARVFKIHPAAPKHWFEQFRHGKLPV 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03060 552 PANTHER TRANSCRIPTION TERMINATION FACTOR MTEF18, MITOCHONDRIAL 15 545 - -
Aip04g03060 552 Pfam mTERF 231 342 IPR003690 GO:0003690|GO:0006355
Aip04g03060 552 Pfam mTERF 425 526 IPR003690 GO:0003690|GO:0006355
Aip04g03060 552 PANTHER CGI-12 PROTEIN-RELATED 15 545 IPR003690 GO:0003690|GO:0006355
Aip04g03060 552 SMART mt_12 475 509 IPR003690 GO:0003690|GO:0006355
Aip04g03060 552 SMART mt_12 443 474 IPR003690 GO:0003690|GO:0006355
Aip04g03060 552 SMART mt_12 282 313 IPR003690 GO:0003690|GO:0006355
Aip04g03060 552 SMART mt_12 142 172 IPR003690 GO:0003690|GO:0006355
Aip04g03060 552 SMART mt_12 246 277 IPR003690 GO:0003690|GO:0006355
Aip04g03060 552 Gene3D Transcription termination factor 3, mitochondrial 300 547 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03060 Aip-Chr4 123651502 123653815 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Aip04g03060 mTERF 4.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03060 - - adu:107486036 1087.02