Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03055 ATGTCCCTAGAAGGAGCAAAATATCTTGTATCATTTATTGATGATTACTCTAGGAGGCTATGGGTGTACCCGATCAAGAAGAAGTCAGACATGTTTGCGATGTTCAAAGAGTTCAAAGCAAAGTTAGAACTTGAATCTGGAAAGAAGATCAAGTGTttaaggacagataatggaggagaatatgttgatgGGTTTCAGGTGCAGCATAAACTTGTCTTCATTGATGGTAATGCTTCTCACTCTGAAAATTGTTTCAAATTTACTATTCTATATGCTGCTGTGTTTGTGAATCAGTATGGACCTGAAAGCAATGGTGCCATGAGTTGCATCTTTGGAAGAAGCTTAACGATGATGCAATTCTCAACCAAGAATTTCATTGGCAGGGACGAATTTGGGCTTGTTTTCAAGGGGGTTTTGTCCGATGGTTTAGTCGTGGCGGTTAAGAGGATCTTGGAATATGATTTTCAAGGGGATGTGGAGTTTTGTAATGAGGTGGAGATTATTAGCAACCTGAAGCACCGGAATCTGGTGCCTCTTCGAGGCTGTTGTGTAGTGGATGATGATGATGAAAAATTTAATGCAGGGGAAGCCAGAGCAAACGTTGAAGAAATCGCTGACTTGGCCTCAAAGGAAGAGCATAATCTTGGATGTGGCAAAGGGGCTGGCTTATCTGTCGTGTGA 681 0.3965 MSLEGAKYLVSFIDDYSRRLWVYPIKKKSDMFAMFKEFKAKLELESGKKIKCLRTDNGGEYVDGFQVQHKLVFIDGNASHSENCFKFTILYAAVFVNQYGPESNGAMSCIFGRSLTMMQFSTKNFIGRDEFGLVFKGVLSDGLVVAVKRILEYDFQGDVEFCNEVEIISNLKHRNLVPLRGCCVVDDDDEKFNAGEARANVEEIADLASKEEHNLGCGKGAGLSVV 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03055 226 ProSiteProfiles Integrase catalytic domain profile. 1 107 IPR001584 GO:0015074
Aip04g03055 226 ProSiteProfiles Protein kinase domain profile. 120 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g03055 226 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 119 198 - -
Aip04g03055 226 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 60 116 - -
Aip04g03055 226 Gene3D - 1 115 IPR036397 GO:0003676
Aip04g03055 226 SUPERFAMILY Ribonuclease H-like 3 64 IPR012337 -
Aip04g03055 226 SUPERFAMILY Protein kinase-like (PK-like) 119 187 IPR011009 -
Aip04g03055 226 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 119 198 - -
Aip04g03055 226 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 60 116 - -
Aip04g03055 226 Pfam Protein tyrosine and serine/threonine kinase 123 185 IPR001245 GO:0004672|GO:0006468
Aip04g03055 226 Gene3D Phosphorylase Kinase; domain 1 116 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03055 Aip-Chr4 123568104 123572579 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03055 120 190 Receptor kinase-like Gene Family AT1G11050 74.648 9.69e-30 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Aip04g03055 PK_Tyr_Ser-Thr 1.2e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03055 - - aip:107640759 195.282