Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03044 ATGGCTTCAATGAACTTGCTGGGTTTCTCTCTCTCCCCTCAAGAACAACACACTACTACTACTCATCATCATCAAACTCGTTTTGGGCTATTCAATCCCACTGCACAAGATGATGTAACTGCTGCTGATGATGGAAACTGCTTCGATCTCACTCCTTCCACTCATGCCGCTACTACTCTCAACCTCCCTCCTTTTCCCATATATCAAGAACCCTTCAACAATCATCATCATCTTTCTACTCATCAAGATTGGAAGGAGAATAACTACATCAACCAAAACCTGCTATTGGAAACTTCATGCAACAACAATAACAATGTCGACAACAACCACCACCACCAACAACCCAAGCTCGAGAACTTCCTCGGTGGACACTCCTTCGCCGATCATCATCATGATTACGGTGCCAACTCATCAGGAGACTACCTCTTCCAAAACTGCTCTCAGCCGGAAGTTACAGCAGGAGGAGGAGAAGGCTCCGCCGGCGGCGGCGGTGGAAGCACAAACTCAATAGGGTTGTCAATGATAAAAACATGGCTGAGGAACCAACCACTTCATCATCATCATCACTCATCAGAAAACAAAGAAACCATGATTGCATCTTCAAATAACACTACTGCACCAACAACTCAAACATTGTCGCTTTCTATGAGTACTGGCTCACAATCTCTCCCACTATTACCACCTACTAATAATAATAATGTTAGTGTTGCCGGTGCCGGTGCCGGAGGAGGAGGCGGAGACAGTTATTCTTCGTCGGAAATAAACAGCAGCAACAACAACAAGCAGATAGTAGTAGTAGCAGGAGGGTCTTCATCAACGGGAGCAGTTGAAAATGGAAGTATTGTTGAGAATAACAATGTGACCAAAAAATCCATTGACACTTTTGGACAAAGAACTTCCATTTACCGTGGTGTAACAAGGCATAGGTGGACAGGGAGATATGAAGCTCATTTGTGGGATAATAGTTGTAGAAGAGAGGGACAGACTCGCAAAGGGAGGCAAGGAGGTTATGACAAAGAAGAAAAAGCAGCTAGAGCCTATGATTTAGCAGCCCTAAAATACTGGGGAACCACAACAACAACAAATTTTCCGATTAGTCAATATGAAAAAGAATTAGAAGAAATGAAGCACATGACAAGGCAAGAGTATGTTGCGTCATTGAGAAGGAAGAGTAGTGGATTTTCCCGTGGTGCATCCATTTATCGTGGAGTAACAAGGCATCATCAACATGGTAGATGGCAAGCTCGGATTGGAAGAGTTGCAGGCAACAAAGATCTTTATCTAGGAACTTTTAGCACTCAGGAAGAGGCAGCAGAAGCATATGACATAGCAGCCATAAAGTTCCGAGGTTTGAATGCAGTTACAAACTTCGACATGAACAGATACGATGTGAAGAGCATACTAGAGAGCAGCACCTTGCCCATTGGTGGCGCCGCCAAGAGGTTGAAGGACATGGACAATGGAGACCTAATTAATGTAGACAATAGTGTTCACCAAAGACAACACCAAGAAGATCACAGCAACAACATCAATTCTCATTCTCTAACTGATGGAATCAACAACTTTGTAACTGCGGCGGCCGCCACCCATCATGGTGGTTGGCCTGCTTCCCTTGCATTCCAACACTACCCTGCTAACTATGGATCATCATCATCATCATCACAAAGGTTCTGGTGCAAGCAAGAGCAAGATTCTTCTGATCAAAACAATGTGTCTCACAATTTTCATCAAGAGATTCATCCTTTGCAACTAGGGGGTAGTACCCACAATTTCTTTCAGCATGGTATCATGACATTGGATCATTCTGCTTCCATGGATAACAATAACAGCTCTGGATCAAGCTCTGTGGTTTATGGTGGGGGTGGTGGTGGTGGTGGTGATGTCAATGGTTATGTGTTTCCAATGGGTGCTGTTATTGGCAATGATAACAATGAAATCAAGGGACTTGGCTATGAAAGTGTTTTTGGCAGTGAGGCATATAATCAAACACATGGAAGGCATCTGTATTATCAGCAACAATCATCAGCAATGGATCATAACAATAATGGAGCTGTAGTAGTTAAGGGTAGCCCATATGATCATCATCATCATCATGGTGGTGGTTCCAACAATTGGGTTCCAACTGCAATACCCACTCTTGCAGCATCAAGGGGTCTCTGCCATGGGGCTCCACCATTCACATTATTGCATGAATGA 2196 0.4381 MASMNLLGFSLSPQEQHTTTTHHHQTRFGLFNPTAQDDVTAADDGNCFDLTPSTHAATTLNLPPFPIYQEPFNNHHHLSTHQDWKENNYINQNLLLETSCNNNNNVDNNHHHQQPKLENFLGGHSFADHHHDYGANSSGDYLFQNCSQPEVTAGGGEGSAGGGGGSTNSIGLSMIKTWLRNQPLHHHHHSSENKETMIASSNNTTAPTTQTLSLSMSTGSQSLPLLPPTNNNNVSVAGAGAGGGGGDSYSSSEINSSNNNKQIVVVAGGSSSTGAVENGSIVENNNVTKKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPISQYEKELEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMNRYDVKSILESSTLPIGGAAKRLKDMDNGDLINVDNSVHQRQHQEDHSNNINSHSLTDGINNFVTAAAATHHGGWPASLAFQHYPANYGSSSSSSQRFWCKQEQDSSDQNNVSHNFHQEIHPLQLGGSTHNFFQHGIMTLDHSASMDNNNSSGSSSVVYGGGGGGGGDVNGYVFPMGAVIGNDNNEIKGLGYESVFGSEAYNQTHGRHLYYQQQSSAMDHNNNGAVVVKGSPYDHHHHHGGGSNNWVPTAIPTLAASRGLCHGAPPFTLLHE 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03044 731 CDD AP2 300 366 IPR001471 GO:0003700|GO:0006355
Aip04g03044 731 ProSiteProfiles AP2/ERF domain profile. 301 364 IPR001471 GO:0003700|GO:0006355
Aip04g03044 731 MobiDBLite consensus disorder prediction 202 255 - -
Aip04g03044 731 PANTHER BNAC02G44180D PROTEIN 5 652 - -
Aip04g03044 731 SMART rav1_2 301 370 IPR001471 GO:0003700|GO:0006355
Aip04g03044 731 SMART rav1_2 400 464 IPR001471 GO:0003700|GO:0006355
Aip04g03044 731 SUPERFAMILY DNA-binding domain 399 459 IPR016177 GO:0003677
Aip04g03044 731 Pfam AP2 domain 400 450 IPR001471 GO:0003700|GO:0006355
Aip04g03044 731 Pfam AP2 domain 301 356 IPR001471 GO:0003700|GO:0006355
Aip04g03044 731 ProSiteProfiles AP2/ERF domain profile. 400 458 IPR001471 GO:0003700|GO:0006355
Aip04g03044 731 MobiDBLite consensus disorder prediction 1 24 - -
Aip04g03044 731 SUPERFAMILY DNA-binding domain 300 366 IPR016177 GO:0003677
Aip04g03044 731 MobiDBLite consensus disorder prediction 202 237 - -
Aip04g03044 731 PRINTS Ethylene responsive element binding protein signature 302 313 IPR001471 GO:0003700|GO:0006355
Aip04g03044 731 PRINTS Ethylene responsive element binding protein signature 440 460 IPR001471 GO:0003700|GO:0006355
Aip04g03044 731 Gene3D AP2/ERF domain 301 366 IPR036955 GO:0003700|GO:0006355
Aip04g03044 731 Gene3D AP2/ERF domain 400 460 IPR036955 GO:0003700|GO:0006355
Aip04g03044 731 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 652 - -
Aip04g03044 731 CDD AP2 399 458 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03044 Aip-Chr4 123461602 123466897 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03044 275 642 AP2-EREBP Transcription Factor Family AT5G17430 58.421 6.40e-130 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Aip04g03044 AP2 4e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03044 K09285 - gmx:100797584 689.108