Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03008 ATGGATTCTGATTCAAAAGGTGGAGTCTTTCCGGCTTTTCCAGCAAAGAGAAGCATAGCTGAGAGAAGGGGTTTCAATTCCAATGCAGCAAGGATCAACACAGCTAGGTTCAGAACAAACGCAATCACAACAAGCCCTTTCGCTTCTCCATCTCCATCTTCTTGTTCTGCATCACCATGCATTACTATACCCCCAGGCATTAGTCCCACTGCATTGCTTGATTCTCCGATCATGCTTCCCAATTCTCAGGCTATGCCTTCTCCAACTACTGGCTCATTTCATTGGCTAAGTTCTTTGCCACTTGATCAAGGGAATCTCAATGATGCTCCTGATTCTTCCCTCAAGTTTAAGAACAATGCCACCCTTGCCGATCCTAATCCTTTGCCTCCTTACTCTGCGTCTCTGAATCAGGTTTCTAGTAATTGGCACATGGTAAAGGGAGGAAATACAGACTGTCAATCAATTGTTCCAGTTCTGCCGCCGATAGATTTTTCGTTCCCGGAAGACTTTTCGAAAGGACAAAACGCAAAAAGTATTGAGTCCCGTTCATTCAATGATGTGAAAATGGTAAATTGTTCACTTGTTAATGTTAATAAAGTTGAGATGATGCAAATATCACGTTCCGATGAAGCTGGTGATGAAAGCACTCTGCCGAAAAATGTTACTCTTGGTGGGGATATCAGAAGGCAACCTGTTATGGAGAAAGACCAGAAGGAGACCTTGCTTGCAACTGGAGTGGTAAGGACCTCGGAGGATGGTTATAATTGGAGAAAGTATGGTCAGAAACAAGTAAAAGGTAGCGAGTATCCTAGGAGTTATTATAAATGTACTCAACCTAATTGTCAGGTCAAGAAGAAGGTGGAAAGATCCCATGATGGCCAAATAACAGAAATTATCTATAAGGGTACTCATAACCATTCAAAACCACACCTTGGTCGTCGAGCGTTAGGGCTTTCCACTGATGAGATGTCAGAGATGGGTGAAGCTGGTGAAAACTATGCTAAACTTGAAGGTCCAGGTTGGAAAAATGTTCAACCGGGAGCAAAAGACACAAAGCACAGTTTGGATTGGAAGGCTGATGGTCAGGAAAGAACATCCTCAACTTCTGTCGTGACTGAACTTTCGGATCCTATGTCGACTAACAAAGGTAAACCTTTGTGTGCCTTTGAAGCGGAAGACACTCCCGAACATTCTTCCACACTTGCCAGTAATGATGGTGATGAAGATGGAACCACTCAAGCACTAGCACCAGCTGAGGATGATGCTGAAGATGATGAATCAGATTCCAAAAGAAGGAAAAAAGAGAACTACTTGGTTGAATCAACTTTGCCTTCTAGGGCTGTTCGTGAGCCAAGAGTGGTGGTCCAAATTGAGACCGAGATTGACATACTCGATGATGGTTATCGATGGCGCAAGTATGGACAAAAGGTTGTCAAAGGAAACCCAAACCCAAGGAGCTACTATAAATGCACAAGTGCCGGATGTCCCGTGAGGAAACACGTCGAAAGGGCTTCGCACAATACGAAATATGTAATCACTACATATGAGGGCAAACATAATCATGAAGTGCCGACGGCCAGAACCAACAATCATGTAAGCTCGAATGATGGTGGTTTACCTCCCAGTGGTCCTAATGGCCAATCAGCTCTTGCATTACCTGGCAGTGCTGTTATCCCGAAGTCTGAAAATCATCAAACTCTTACGTCTCATTTTGATCGAAAACCTGAATTCGGCAGCGACTTTCTTCGGCCGAGTTTGGTTGGAGCATTCAGCAACAATTTGAAGTTCGGTTCTTCCCCCATGTGCCAAATGAAGTATCCTTCCTTGAGTAGCACCATGCCTTACGGTTCGTTTGGACTGAATCCCGATCGCTGCACTGCCCCACAAGCTGGATCTATTCCCTCAGTGTATCCCGACTTTCCAATGCCGCTTCCCTTGAATCTTCCCTCATCCGGAAACTTCTCTCTTGCTGGACTAAACTTCAACTGTGCAAAGCCAATGAATCCAGTGCAGCCTTTCCTTTCAGGGCAACAAGTGAAGGATATTGATACTGGGTTCTTGAGGCCTAAACAGGAGCAGAAGGATGATGCAATATATGGAACATGCTTACCTCCAGTTGATCATGGAAATTCTTCATCAGCAGCACCATCATCCATTTACCAGCAAGTCATGCAAAATTTCCCTTCATAA 2190 0.4438 MDSDSKGGVFPAFPAKRSIAERRGFNSNAARINTARFRTNAITTSPFASPSPSSCSASPCITIPPGISPTALLDSPIMLPNSQAMPSPTTGSFHWLSSLPLDQGNLNDAPDSSLKFKNNATLADPNPLPPYSASLNQVSSNWHMVKGGNTDCQSIVPVLPPIDFSFPEDFSKGQNAKSIESRSFNDVKMVNCSLVNVNKVEMMQISRSDEAGDESTLPKNVTLGGDIRRQPVMEKDQKETLLATGVVRTSEDGYNWRKYGQKQVKGSEYPRSYYKCTQPNCQVKKKVERSHDGQITEIIYKGTHNHSKPHLGRRALGLSTDEMSEMGEAGENYAKLEGPGWKNVQPGAKDTKHSLDWKADGQERTSSTSVVTELSDPMSTNKGKPLCAFEAEDTPEHSSTLASNDGDEDGTTQALAPAEDDAEDDESDSKRRKKENYLVESTLPSRAVREPRVVVQIETEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCPVRKHVERASHNTKYVITTYEGKHNHEVPTARTNNHVSSNDGGLPPSGPNGQSALALPGSAVIPKSENHQTLTSHFDRKPEFGSDFLRPSLVGAFSNNLKFGSSPMCQMKYPSLSSTMPYGSFGLNPDRCTAPQAGSIPSVYPDFPMPLPLNLPSSGNFSLAGLNFNCAKPMNPVQPFLSGQQVKDIDTGFLRPKQEQKDDAIYGTCLPPVDHGNSSSAAPSSIYQQVMQNFPS 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03008 729 SMART WRKY_cls 250 308 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip04g03008 729 SMART WRKY_cls 464 523 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip04g03008 729 SUPERFAMILY WRKY DNA-binding domain 248 309 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aip04g03008 729 MobiDBLite consensus disorder prediction 526 542 - -
Aip04g03008 729 MobiDBLite consensus disorder prediction 523 552 - -
Aip04g03008 729 Gene3D WRKY domain 238 310 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aip04g03008 729 ProSiteProfiles WRKY domain profile. 459 524 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip04g03008 729 MobiDBLite consensus disorder prediction 333 437 - -
Aip04g03008 729 SUPERFAMILY WRKY DNA-binding domain 457 524 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aip04g03008 729 MobiDBLite consensus disorder prediction 361 379 - -
Aip04g03008 729 Pfam WRKY DNA -binding domain 465 522 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip04g03008 729 Pfam WRKY DNA -binding domain 251 306 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip04g03008 729 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 29 706 IPR044810 GO:0003700
Aip04g03008 729 MobiDBLite consensus disorder prediction 396 410 - -
Aip04g03008 729 Gene3D WRKY domain 451 517 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aip04g03008 729 ProSiteProfiles WRKY domain profile. 245 309 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip04g03008 729 PANTHER WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1 29 706 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03008 Aip-Chr4 122953008 122956528 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03008 5 527 WRKY Transcription Factor Family AT5G56270 41.091 2.10e-94 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Aip04g03008 WRKY 1.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03008 K18835 - gmx:100800211 984.171