Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02998 ATGGAATTCGATGCTGCAATTCCCATGTCCCGTGAAGGCATCCCTCAAGATGCAATGTGGCAAATGAACTTGAGGTCGAGTGAAACGATGGAACCTGGACCTTATCCTGAGCATCCAGGAGAACCAGATTGTTCATATTACATCAGAACAGGACTCTGTAGATTCGGAGCAACATGTCGATTTAACCATCCTCCTAACAGGAAACTGGCTATTGCCGCTGCACGGATGAAAGGAGAGTTCCCAGAAAGGATAGGGCAGCCAGAATGTCAGTATTATCTGAAGACAGGAACTTGCAAATTCGGAGCCACATGCAAGTTTCATCATCCTAGAGACAAGGCCGGGATTGCTGGAAGAGTTGCTTTAAATATTTTAGGCTATCCACTCCGCCCGAATGAGGCAGAATGTGCTTACTATTTAAGAACCGGACAGTGCAAATTTGGGAACACTTGCAAATTCCATCATCCTCAACCAAGTAATATGGTGCTTTCAATGCGCAGTCCGTCGAGTTATGCATCTTTGATTCTACCTCAGGGAGTGGTTTCGGTACCTGGCTGGGGTGCATACAATGGTCAAATGGGATCAGACAGTACACAACAATCAGTTGGAAATGGTCAAACATATGCATCCTCTCGTCAAGGCGAATCGGCAAATGCAGGATCCCAAGGAGCATATTCTCAATACCGTTCTGGATCAGTTCCCGTAGGTTTCTATGCATTGCAGAGGGAGAACATATTTCCTGAAAGACCTGGCCAGCCTGAATGCCAATTCTACATGAAGACTGGAGATTGTAAGTTCGGTGCAGTCTGCCGTTTCCATCATCCGCGCGAGAGGCTGATTCCTGCTCCTGATTGTCTTTTGAGTCCAATTGGCCTTCCTTTACGTCCGGGAGAGCCATTGTGTGTCTTTTACTCGCGATATGGTATATGCAAATTCGGCCCGAGTTGCAAGTTCGACCACCCCATGGGAATCTTTGCCTATAATATGTCTACATCACCCTCAGCTGATGCTTCAGGACGACGAATGTTGGGTTCTTCATCAGGAACCGCCGCATTAAATTTATCACCAGAAGGACTTGTTGAGTCAGGCTCTGCGAAGCCAAGGAGGCTTTCGTTGTCGGAGACTAGACAACTTCCTTCCAGTGATGATAACATTGATGATGAGGGATAA 1167 0.4679 MEFDAAIPMSREGIPQDAMWQMNLRSSETMEPGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIAAARMKGEFPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPNEAECAYYLRTGQCKFGNTCKFHHPQPSNMVLSMRSPSSYASLILPQGVVSVPGWGAYNGQMGSDSTQQSVGNGQTYASSRQGESANAGSQGAYSQYRSGSVPVGFYALQRENIFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLIPAPDCLLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFAYNMSTSPSADASGRRMLGSSSGTAALNLSPEGLVESGSAKPRRLSLSETRQLPSSDDNIDDEG 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02998 388 MobiDBLite consensus disorder prediction 193 224 - -
Aip04g02998 388 MobiDBLite consensus disorder prediction 335 352 - -
Aip04g02998 388 ProSiteProfiles Zinc finger C3H1-type profile. 294 322 IPR000571 GO:0046872
Aip04g02998 388 ProSiteProfiles Zinc finger C3H1-type profile. 83 111 IPR000571 GO:0046872
Aip04g02998 388 SUPERFAMILY CCCH zinc finger 43 66 IPR036855 GO:0046872
Aip04g02998 388 SUPERFAMILY CCCH zinc finger 252 278 IPR036855 GO:0046872
Aip04g02998 388 PANTHER PROTEIN PHOSPHATASE RELATED 11 166 - -
Aip04g02998 388 PANTHER PROTEIN PHOSPHATASE RELATED 165 387 - -
Aip04g02998 388 Gene3D - 37 116 - -
Aip04g02998 388 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 11 166 - -
Aip04g02998 388 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 165 387 - -
Aip04g02998 388 ProSiteProfiles Zinc finger C3H1-type profile. 39 66 IPR000571 GO:0046872
Aip04g02998 388 SUPERFAMILY CCCH zinc finger 297 321 IPR036855 GO:0046872
Aip04g02998 388 MobiDBLite consensus disorder prediction 335 388 - -
Aip04g02998 388 Gene3D - 117 165 - -
Aip04g02998 388 ProSiteProfiles Zinc finger C3H1-type profile. 129 157 IPR000571 GO:0046872
Aip04g02998 388 SMART c3hfinal6 248 275 IPR000571 GO:0046872
Aip04g02998 388 SMART c3hfinal6 294 321 IPR000571 GO:0046872
Aip04g02998 388 SMART c3hfinal6 83 110 IPR000571 GO:0046872
Aip04g02998 388 SMART c3hfinal6 129 156 IPR000571 GO:0046872
Aip04g02998 388 SMART c3hfinal6 38 65 IPR000571 GO:0046872
Aip04g02998 388 Gene3D - 240 325 - -
Aip04g02998 388 SUPERFAMILY CCCH zinc finger 87 112 IPR036855 GO:0046872
Aip04g02998 388 SUPERFAMILY CCCH zinc finger 131 157 IPR036855 GO:0046872
Aip04g02998 388 ProSiteProfiles Zinc finger C3H1-type profile. 248 276 IPR000571 GO:0046872
Aip04g02998 388 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 86 110 IPR000571 GO:0046872
Aip04g02998 388 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 250 275 IPR000571 GO:0046872
Aip04g02998 388 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 132 156 IPR000571 GO:0046872
Aip04g02998 388 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 296 321 IPR000571 GO:0046872
Aip04g02998 388 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 40 65 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02998 Aip-Chr4 122809077 122814713 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02998 19 386 C2H2 Transcription Factor Family AT3G02830 62.217 5.79e-171 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aip04g02998 zf-CCCH 4.6e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02998 - - adu:107485976 787.719