Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02993 ATGTCTTCTTCCTCACTCGGCGCCCATCCTCCGTCGGATTCTTCTTGCTCGCGGTCGTCTTGTCGCCGTCGTCTCGGCGTCATTGTCTCGAAGAAAAAAACCAATTACTTGGAACACTTGCACACAAACATGCCCAATCCTAGCAGCAGCTTCCCAATGGATCCTTCGTTGGGTCTTTCCCCTGTTCTTAGAACCTTGGTTGTAATCATGGTAGCAATGGCAGCTAGGTATGATCTCATCAAGTGTATCAATGCTGGTCCAGCGCATAAGGTGTGGAAGCTCAAAGTACGTGTCATTAGACTTTGGACCGTTTCTCAATTTGCAAAATCTGGAATGAAGGCACCTATTGAGATGGTTGTCCTTGATGAAGAGGGGGATACAATTCAATGCACTGTAAAAGACATATTTGTTCCTATCTTCGAGGGCTTACTCGCTGAGGGCAACGTGTATGTGGTCACTAATTTTGGAGTTGCTTTGAATACCATCAAGTTCAAGCCTACTAGACACGAATTTAGAATCCACTTCAAGAGGGACACGATTGTGCATCCGGTACAAGATTCTTCATTTCCATTGAACAGATTCAATTTTGTTCCGTTCAAAACAATTCAATCAGAGTCTAAAGAAGATGGTTATTTAGTTGATGTGATAGGTCAGCTTGCCTCTAAGGGTAACTTGGTCGAATTCACCCGGGACGGGAAGCCGTCAAGTTATATCACCATAGAACTTGATGATCTTGAGGGTGGACAGAAATTAAGGGTAACATTGTGGCAGTCTTTTGCTTTTGATTTGCTCAAATATCTGGAGGAACACCCGTGTCTTACCTATGTTGTTATTCTCCAAATGGGCAAGATGAAATTTTATACTGGGGTCATGGGTGTTTCCAACACAAACTACAATTTGAAACTGTTTATCAATGTTGAGTTTCCAGCTGCCAGGGATTTCTTTGCGAGGGTAAACAAATTGGATCCTGTTGACGGACAAGGCATAATGCCGCTGGTCTGTGATCAACCTGTTTCAGTTGAGAAAGACTTTTTGCGCGGGACGATTAAAGAAGTTGAGACCGAGTTTGGTTGGTGGTACAAAGGATGTAAGAAGTGTCGTCGTGGCTTAAGGGAACTTGAGAAAAGATATTTCTGTCCCAATTGCATTAGAGACTACGGGTTCTATGAGCCGAGGTACAACATCCACATAAGGGTGATAGACCACACCGATGCCGCCTCTTTTGTTTTGTTCGATGGAGAAGCTGCAAAGTTTCTTGGAGTTTCTGCTAATGACCTTAGGCAGTCTTGTGTGACTAAGGGTGTTGAGAAAAATTCCTGTCCCGAAGAGATTAATAAGCTTAGGGATATTAAGTTCATCTTCAAAGTGCAACTCAAGATGAGGAATCTGAACTCTTCTGTTTGTTTGGTGATATTGTCCAAAGAATGA 1428 0.4314 MSSSSLGAHPPSDSSCSRSSCRRRLGVIVSKKKTNYLEHLHTNMPNPSSSFPMDPSLGLSPVLRTLVVIMVAMAARYDLIKCINAGPAHKVWKLKVRVIRLWTVSQFAKSGMKAPIEMVVLDEEGDTIQCTVKDIFVPIFEGLLAEGNVYVVTNFGVALNTIKFKPTRHEFRIHFKRDTIVHPVQDSSFPLNRFNFVPFKTIQSESKEDGYLVDVIGQLASKGNLVEFTRDGKPSSYITIELDDLEGGQKLRVTLWQSFAFDLLKYLEEHPCLTYVVILQMGKMKFYTGVMGVSNTNYNLKLFINVEFPAARDFFARVNKLDPVDGQGIMPLVCDQPVSVEKDFLRGTIKEVETEFGWWYKGCKKCRRGLRELEKRYFCPNCIRDYGFYEPRYNIHIRVIDHTDAASFVLFDGEAAKFLGVSANDLRQSCVTKGVEKNSCPEEINKLRDIKFIFKVQLKMRNLNSSVCLVILSKE 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02993 475 CDD RPA1_DBD_B_like 214 314 - -
Aip04g02993 475 Gene3D - 338 473 IPR012340 -
Aip04g02993 475 PANTHER REPLICATION FACTOR A 1, RFA1 88 458 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip04g02993 475 SUPERFAMILY Nucleic acid-binding proteins 194 317 IPR012340 -
Aip04g02993 475 CDD RPA1_DBD_C 336 464 IPR013955 -
Aip04g02993 475 Gene3D - 80 187 IPR012340 -
Aip04g02993 475 Gene3D - 188 322 IPR012340 -
Aip04g02993 475 Pfam Replication factor-A C terminal domain 346 464 IPR013955 -
Aip04g02993 475 CDD RPA1_DBD_A_like 93 181 - -
Aip04g02993 475 Pfam Domain of unknown function DUF223 117 207 IPR003871 -
Aip04g02993 475 SUPERFAMILY Nucleic acid-binding proteins 87 187 IPR012340 -
Aip04g02993 475 SUPERFAMILY Nucleic acid-binding proteins 344 466 IPR012340 -
Aip04g02993 475 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-LIKE 88 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02993 Aip-Chr4 122728386 122733166 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02993 71 465 Core DNA Replication Machinery Family AT5G08020 22.603 1.32e-17 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02993 - - adu:107477146 757.288