Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02988 ATGAGTAACTTCATAGTTGTGAACAAGATGGAGAAGATTAAAACAACAAGAAATCGGTGGACTTTGAACTTTTCCCACAGAACAGTTGTGGTTCGCGTGGAAAATCCAAGTTTTTCTCTCGAACCCTTCTGCTTGAAGCCTATCCCAGAGCTCCTTGCTGCCGAAAAGCTTGATGATTCTCAACTATTGGACATAATCGGGGAGGTTGTTGGGAAGGATGACCCAAGGGATATAATCACAAGCAAAGGAAAGGAAACAAAACATATGGTGGTTGTGATAGCAGACCTAGATAACAACAATCTTGATTGTGTGTTATTTGGTGACATGGTCGATCAAATAGTTCCCCATCTTGAAGATGGCAGGGTTGAACCACTAATAGTGGTGTTGCAGTTCTTTAAACCCAGCCGATGGAATGATAAGGTATCGGTTCAGAGCCACTTTGATGTCTCTAAAATACATGTTAATCCTGACATGAAGGAAGTACATGATTTTCGAAAAAGCTTGCTTGGCAGTGTAACCTCTAATTCGGTCAGGATTAGTCAGGTATCCGGTCATGGTGTGCAATCTGGTGCTGCAGAACTGAAAAGAGGAGGTGTCGTAGTGAAATCAATAGAGGACGCACTCAATTCAACAGAGGAAGGTCCTATATGGATTGGCGGAACCATTGTCTCTATCAATGCTGACAACAACGATTGGTTTTACAAATCGTGTAGGAAGTGTCCAAAGAAAGTAGAAACCCCAATTGGAAATCGATATGAATGTTCCAAGTGTGGTCACACACATGGCAGTGCATCCCTTAGGTACAAGGTTGAAGTTATGGCCTATGATGGAACAGGAAGTATAACTATGCTAATGTGGGATAGAGAAACAACACAGCTTATAGGGAGGCAAGCTGAACAAATCAAGGATGAAGATTGTTTGGAAGGGGAAGGTTACCCCCCAACTCTTGATAACATGATGGATAAAAAGTTACTCTTTAAAATTAATGTCAAAACAGCCAACATCAACAAGCATGACCAGGTTTACACTATCATGAAGATATGTGACGATGAAGACATTGTAGAAAAAAATTGCCCTATGGAATTCATCAGCAATCCTTCTGACGTCTTAACTGAGAATGGGATCAGCAATTCAATGGATGTTTCAGCAACTGTGGCTAATCTCAAGTCTGATAATAATTCTCAGTGCTCTGTGGATGTTGTGGAGGATTCTGTCACAAGCCTCAAGTGCAAGACCCCAATTAGGAGAGCTCTCAATGGGTAA 1263 0.4149 MSNFIVVNKMEKIKTTRNRWTLNFSHRTVVVRVENPSFSLEPFCLKPIPELLAAEKLDDSQLLDIIGEVVGKDDPRDIITSKGKETKHMVVVIADLDNNNLDCVLFGDMVDQIVPHLEDGRVEPLIVVLQFFKPSRWNDKVSVQSHFDVSKIHVNPDMKEVHDFRKSLLGSVTSNSVRISQVSGHGVQSGAAELKRGGVVVKSIEDALNSTEEGPIWIGGTIVSINADNNDWFYKSCRKCPKKVETPIGNRYECSKCGHTHGSASLRYKVEVMAYDGTGSITMLMWDRETTQLIGRQAEQIKDEDCLEGEGYPPTLDNMMDKKLLFKINVKTANINKHDQVYTIMKICDDEDIVEKNCPMEFISNPSDVLTENGISNSMDVSATVANLKSDNNSQCSVDVVEDSVTSLKCKTPIRRALNG 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02988 420 CDD RPA1_DBD_B_like 64 168 - -
Aip04g02988 420 PANTHER REPLICATION FACTOR A 1, RFA1 29 405 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip04g02988 420 Gene3D - 179 358 IPR012340 -
Aip04g02988 420 Gene3D - 40 174 IPR012340 -
Aip04g02988 420 CDD RPA1_DBD_C 201 347 IPR013955 -
Aip04g02988 420 SUPERFAMILY Nucleic acid-binding proteins 205 355 IPR012340 -
Aip04g02988 420 PANTHER BNAC07G49340D PROTEIN 29 405 - -
Aip04g02988 420 SUPERFAMILY Nucleic acid-binding proteins 47 168 IPR012340 -
Aip04g02988 420 Pfam Replication factor-A C terminal domain 220 347 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02988 Aip-Chr4 122679710 122682013 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02988 17 301 Core DNA Replication Machinery Family AT2G06510 24.667 1.31e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02988 - - aip:107635133 756.903