Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02950 ATGGAGCTTCACTACCTCAACATTATTTTCACAATCTTCATTCTCTTATCTCTATTTCCTCAATATCTCCATTGCCAACAACAATTCCTCAATGAAACTGTCTTTGACTGCTCCAGCAACCCTTCCACACCAAAAGGGTACCTGTGCAATAGTCCTAAAAAATCATGCACTTCCTTCTTAGTTTACAGGTCCAAACCTCCCTATAACACCCCTCAAACCATTGCAAATCTTCTTGCTTCTGAAGAATCCACAGTATCCTCCATCAACAAAATTTCAAGTAATAAAAAAATTCCTACCAACAAATCAATCATTGTTCCTGTGTCTTGCTCCTGTTCTGGAAATATTTATCAACACAATGCTTTTTACACAGTCAATAAGGATGACACATATTTCATGTTAGTGAACACTACTTACCAAGGCCTCACAACATGCCAGGCTTTGATGGGACAGAACTACTATGCTTCTGTCAACATTGCCATTGGTGCTCAGCTCACAGTTCCCATGCTATGTGCTTGTCCAACTGCAAACCAAACAGCAAAAGGCGTGACATCATTGCTCGTTTACTCGCTTGGCGAAGGCGACACAATCAAGTCAATAGGAGAGACTTATGGTGTTGATGAACAAAGTATTCTTGATGCCAATGAGCTGAACCAGACATCAAATGGAAACAGAAGCTTGAGCCTTATGGCGAGGACTCCGATTTTGATTCCATTGAGGGGTAAGAGCTGCAAAGATGATCCAGAGAGTTTCTATTGTACATGTTCTCAGGGAGATGTCACAAATTCAAGCCTCATAGGACTCAACTGTGAAGAATCAGATGGTCAAAAATTTCCTGCTAAATTGGTTGCAGCACTAGGTGTTGGCATTGGTGCTGGCTTTCTCTGTTTGTTTCTTCTTGGTTATAAGCTGTACCAATGCATACAGAAAAAGAGAGAAAAACTTCATAAAGAAAAGCTGTTCAAGCAAAATGGTGGCTACTTGCTACAAGAGAAGGTCTCATCTTATACAAATGGACAAAGGACAAAGCTTTTTACCGAGGAGGAGCTGAAGAGAGCAACAGATAACTACAACCAGAGTAGGTTCCTTGGTCAAGGCGGCTTTGGCACGGTCTACAAAGGAATGTTACCAGACGGAACCATAGTCGCCGTTAAGAGATCAAAAGAGATGGAAAGGAACCAGATACAGACTTTTGTCAATGAAGTTGTGATTCTATCACAGATTAACCACAGGAACATTGTTAAACTCTTGGGGTGTTGTCTTGAGACAGAAGCACCATTACTTGTCTATGAATTTATTCCAAATGGAACACTTTCTGACCATATTCATGTGAAAGAGGACGAGTCATCATCGCTTTCATGGGATGGCCGCCTTCGAATTGCTTGTGAGGTAGCTGGAGCAGTGGCCTATATGCATTCTGCAGCTTCTGTTCCTATCTTCCATAGAGACATCAAACCTTCAAACATACTCCTAGACAGCAACTACAGTGCTAAAGTTTCTGATTTTGGAACATCTAAATCACTTCCATTGGATAATACTCACTTGACAACTGCAGTAAGAGGAACTTTTGGGTACATAGATCCTGAGTATTTTCAGTCCAATCAATATACAGATAGAAGTGATGTGTATAGTTTCGGAGTTGTACTTGTTGAGCTCATAACTGGGAGGAAACCACTTTCATTGTTACAAGATGAGGGTCAGCATCTGATAGCAGAATTCATTTCTCTGATGAAGGAGAACCAGCTTTCTGAAATTCTGGATGCCAAAGTGCTCAAGGAAGCAAGGGAAGATCACATTCTTGCCATTGCAAATCTTGCAATGAGATGCTTGAGACTCAGTGGGAAGAAAAGACCAACCATGAAAGAAGTTTCAGCGGAACTAGAAGCATTGAGAACAGCACAGAGTTCCGTACTTATCGACCTTGACCGCATCTCGCCTGAAGATGGTGGATCACCTAGCCACACCACCAGGGGACCAATTCAAGAATCTGGAGAGGAAAGCATTTTGGTATCCCTACAAATGGAGTCCACATCCTTCTAA 2037 0.4163 MELHYLNIIFTIFILLSLFPQYLHCQQQFLNETVFDCSSNPSTPKGYLCNSPKKSCTSFLVYRSKPPYNTPQTIANLLASEESTVSSINKISSNKKIPTNKSIIVPVSCSCSGNIYQHNAFYTVNKDDTYFMLVNTTYQGLTTCQALMGQNYYASVNIAIGAQLTVPMLCACPTANQTAKGVTSLLVYSLGEGDTIKSIGETYGVDEQSILDANELNQTSNGNRSLSLMARTPILIPLRGKSCKDDPESFYCTCSQGDVTNSSLIGLNCEESDGQKFPAKLVAALGVGIGAGFLCLFLLGYKLYQCIQKKREKLHKEKLFKQNGGYLLQEKVSSYTNGQRTKLFTEEELKRATDNYNQSRFLGQGGFGTVYKGMLPDGTIVAVKRSKEMERNQIQTFVNEVVILSQINHRNIVKLLGCCLETEAPLLVYEFIPNGTLSDHIHVKEDESSSLSWDGRLRIACEVAGAVAYMHSAASVPIFHRDIKPSNILLDSNYSAKVSDFGTSKSLPLDNTHLTTAVRGTFGYIDPEYFQSNQYTDRSDVYSFGVVLVELITGRKPLSLLQDEGQHLIAEFISLMKENQLSEILDAKVLKEAREDHILAIANLAMRCLRLSGKKRPTMKEVSAELEALRTAQSSVLIDLDRISPEDGGSPSHTTRGPIQESGEESILVSLQMESTSF 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02950 678 PANTHER LYSM TYPE RECEPTOR KINASE 26 658 - -
Aip04g02950 678 MobiDBLite consensus disorder prediction 648 664 - -
Aip04g02950 678 SMART serkin_6 356 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g02950 678 Pfam LysM domain 191 219 IPR018392 -
Aip04g02950 678 Gene3D Phosphorylase Kinase; domain 1 321 431 - -
Aip04g02950 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 478 490 IPR008271 GO:0004672|GO:0006468
Aip04g02950 678 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 26 658 IPR045274 GO:0007166
Aip04g02950 678 ProSiteProfiles Protein kinase domain profile. 356 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g02950 678 CDD STKc_IRAK 362 629 - -
Aip04g02950 678 MobiDBLite consensus disorder prediction 641 664 - -
Aip04g02950 678 Gene3D Transferase(Phosphotransferase) domain 1 432 638 - -
Aip04g02950 678 SUPERFAMILY Protein kinase-like (PK-like) 334 626 IPR011009 -
Aip04g02950 678 Pfam Protein kinase domain 356 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g02950 678 ProSitePatterns Protein kinases ATP-binding region signature. 362 384 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02950 Aip-Chr4 122286101 122288337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02950 276 633 Receptor kinase-like Gene Family AT1G16130 54.696 4.98e-134 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Aip04g02950 Pkinase 8.8e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02950 - - gmx:100795455 952.199