Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02949 ATGTGGTTCACTTTGAAAGTTGCTCAAGAGTTCCACATCCCTCACTTTGTATTTTTCACTCCCAGTGCCTGTGGCATGCTGGGATACATTAACTTTGAAGAGATTCAGAAAAGAGGTTATTTCCCATTGAAAGATGAGAAGAATCTGCTTGATGGATATCTTGATACTAAAGTTGATTGGATTCCAGCAATGAAAGGAGCAAGACTAAAAGACCTTCCCACATTTCTTAGGACTACTAATCCTTCTAATGTAATGTTCAATTACAACATAGTAAAAGTGAACACTGCTATGCATGCCAAAGGGGTTATCCTTAACACCTTTGAAGACTTAGAATCAGAGGTTTTGGATGCCATCAGAGCCAAATACTCCAATGTCTACTCCATTGGTCCATTATCAATGATATTCAAACAGCTCTCAAACTCAAATACTCAATTGAAGTCGATTGATCTGAATCTGTGGAAGGAAGACAACAAATGCTTGGAATGGTTGGATAAAAGAGACAGAGGTTCTGTTGTGTATGTGAACTTTGGTAGCTTAGTGATTATGACACCAAAGCAACTAAGTGAATTTGCTTGGGGTTTGGTTAATAGCAAGTACCATTTTTTGTGGGTCATAAGGCCTAATCTTGTGCATGATAATAATAATAATGGTGATGGGAAATTAAGTGATGAATATGTGAATGTGATTGAAAGATGTGAGAGGGGATTGGTATTGGGGTGGTGCCAACAAGAGAAAGTTCAGTGTCATGCATCAATTGGCAGATTTCTAATACATTGTGGGTGGAACTCAACATTGGAGAGCATATGTGAGGGAGTTCCAATGGCATGTTGGCCTTTCTTTGCAGAACAACAAACAAACAGCTTCTATGCATGCAAGAAATGGGGGATTGGGATGGAGATTGAGTGTGATGTTAAGAGAGAGCAGGTTGAGGAGCTTGTGAGGGAACTCATGGAGGGGCAAAAAGGGAAAGAAATTAAGGTAAAAACAACTTACCAAGGACTAACAACATGCCAAGCATTGATGGGGCAGAATTACTATCCCCCTAATGGACTTCCAATTGGTGCTGAACTCACAGTTCCTTTGTTATGTGCTTGTCCAACAGAAAATCAAACTTCAACAGGTGTCACTTCCTTATTGGTTGATTTGATCAACTATGGTCACACCTTGAAGTCCATAGGAGAATCTTATGGTGTTGGTGAACAAAGTATGTTAGAGGCTAATAAGCCACAAAGTAAAAATAGTAGCAGCTTCACCCTCTTGGCCTTAACTCCTATCTTGGTTCCTCTAAGAGGAAAGAGTTGCAAAGAGGATCCAAATAGTTTCTATTGTAACTGTTCTAAGGAATTCCTTGCTGATGGAAGCTTAAAGGGGATTTATTGTGATGAGTCTGATGGTCAAAAATTTCCTGCCAAATTGCATTGTTTGATTTTTGCAGGTGTTGGCATTGGTGTAGGCTTTCTTTGTTTGTTTCTCTTGGGTTATAAACTATACCAATACATACAGAAAAAGAGAGAAAGGATTCACAAGGAAAAGCTATTCAAACAGAATGGTGGCTACTTGTTACAAGAGAAAGTGTCATCATCACATGGAAATGGATCCCAAAAGGTAATAATAAAGCTTTTCACAGCTGAGGAGCTTCAAAGAGCAACAGATAACTACAACTGGAGCAGGTTTCTTGGTCAAGGTGGATATGGAAAAGTCTACAAAGGAATGCTACCAGATGGAACCATAGTAGCTGTTAAGAGATCTAAGGAGATTGAGAGGAACCAGATTGAGACTTTTGTCAATGAAGTTGTCATTTTATCACAGATTAATCACAGCAAACCCCATGAATCATCTTCACCACTTTCATGGGATAGCCGGCTTGGAATCGCATGCGAGGTAGCCGGAGCAGTGGCTTATATGCATTCTTCAGCTTCAATTCCCATCTTCCATAGAGATATCAAACCTACTAACATACTCTTAGATAGTAACTATAGTGCAAAAGTGTCTGATTTTGGAACATCAAGATCATTGCCACAAGACAAGACTCACTTGACAACACAAATAGGAGGAACTTTCGGATACATCGACCCTGAATATTTCCAATCTAGTCAATTTTCGGATAAGAGTGACATGTATAGTTTTGGAGTTGTGCTTGTTGAAATCATAACTGGGAAGAAGCCGTTTCGTTTATAG 2178 0.393 MWFTLKVAQEFHIPHFVFFTPSACGMLGYINFEEIQKRGYFPLKDEKNLLDGYLDTKVDWIPAMKGARLKDLPTFLRTTNPSNVMFNYNIVKVNTAMHAKGVILNTFEDLESEVLDAIRAKYSNVYSIGPLSMIFKQLSNSNTQLKSIDLNLWKEDNKCLEWLDKRDRGSVVYVNFGSLVIMTPKQLSEFAWGLVNSKYHFLWVIRPNLVHDNNNNGDGKLSDEYVNVIERCERGLVLGWCQQEKVQCHASIGRFLIHCGWNSTLESICEGVPMACWPFFAEQQTNSFYACKKWGIGMEIECDVKREQVEELVRELMEGQKGKEIKVKTTYQGLTTCQALMGQNYYPPNGLPIGAELTVPLLCACPTENQTSTGVTSLLVDLINYGHTLKSIGESYGVGEQSMLEANKPQSKNSSSFTLLALTPILVPLRGKSCKEDPNSFYCNCSKEFLADGSLKGIYCDESDGQKFPAKLHCLIFAGVGIGVGFLCLFLLGYKLYQYIQKKRERIHKEKLFKQNGGYLLQEKVSSSHGNGSQKVIIKLFTAEELQRATDNYNWSRFLGQGGYGKVYKGMLPDGTIVAVKRSKEIERNQIETFVNEVVILSQINHSKPHESSSPLSWDSRLGIACEVAGAVAYMHSSASIPIFHRDIKPTNILLDSNYSAKVSDFGTSRSLPQDKTHLTTQIGGTFGYIDPEYFQSSQFSDKSDMYSFGVVLVEIITGKKPFRL 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02949 725 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 327 607 IPR045274 GO:0007166
Aip04g02949 725 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 608 723 IPR045274 GO:0007166
Aip04g02949 725 ProSitePatterns Serine/Threonine protein kinases active-site signature. 643 655 IPR008271 GO:0004672|GO:0006468
Aip04g02949 725 CDD GT1_Gtf-like 1 326 IPR002213 GO:0008194
Aip04g02949 725 SUPERFAMILY Protein kinase-like (PK-like) 532 724 IPR011009 -
Aip04g02949 725 ProSitePatterns Protein kinases ATP-binding region signature. 559 581 IPR017441 GO:0005524
Aip04g02949 725 PANTHER LYSM TYPE RECEPTOR KINASE 327 607 - -
Aip04g02949 725 PANTHER LYSM TYPE RECEPTOR KINASE 608 723 - -
Aip04g02949 725 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 1 328 - -
Aip04g02949 725 Pfam Protein kinase domain 624 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g02949 725 Gene3D Transferase(Phosphotransferase) domain 1 605 725 - -
Aip04g02949 725 Gene3D Glycogen Phosphorylase B; 154 329 - -
Aip04g02949 725 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 170 324 IPR002213 GO:0008194
Aip04g02949 725 ProSiteProfiles Protein kinase domain profile. 553 725 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g02949 725 Gene3D Phosphorylase Kinase; domain 1 524 604 - -
Aip04g02949 725 Gene3D Glycogen Phosphorylase B; 1 147 - -
Aip04g02949 725 SMART serkin_6 553 725 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02949 Aip-Chr4 122280988 122285093 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02949 1 329 Glycosyltransferase AT1G22340 47.720 1.82e-109 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Aip04g02949 UDPGT 2.3e-19 CL0113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02949 - - ahf:112743231 724.931