Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02941 ATGTCCATGTCTTCAACCTCATCATTCCTCAACCACCTTGGCCTTGGCTACTCCATAGCCATAGCCCTTGCTTTCCTCGTTCTCCTCTCCACCCTCATCTTATCTTCTTACCTCTGCTGTAACCGCAACCGTAACCGCAACCCTCACAATAATAATAACAACTCCACCACCACCCACCGTGACGGCGTCGTTCTCCCGCGAATAATCTTCGTCGCAGAAGGCGATGATGACGAAGACGGAGACGAAGAGCGCGGCGCGGTGGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCACGTGTTCCATATGTCTGTGTGAGTACAAGGATTCGGAGATGCTGAGGATGATGCCAGAGTGCAGGCACTATTTCCACGTCTGCTGCCTTGACTCCTGGCTTAGGCTTAATGGCTCCTGCCCCGTTTGCCGGAACTCGCCGCTTCCGACGCCGGTTCCCACGCCGCTGTCGACGCCGCTGCAGGAGGTGGTGCCGCTGTCTCAGTATGCTGCTGATAGGAGGAGGAGGTGA 645 0.4341 MSMSSTSSFLNHLGLGYSIAIALAFLVLLSTLILSSYLCCNRNRNRNPHNNNNNSTTTHRDGVVLPRIIFVAEGDDDEDGDEERGAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCSICLCEYKDSEMLRMMPECRHYFHVCCLDSWLRLNGSCPVCRNSPLPTPVPTPLSTPLQEVVPLSQYAADRRRR 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02941 214 PANTHER RING-H2 FINGER PROTEIN ATL67 3 83 IPR044289 GO:0016567|GO:0016740
Aip04g02941 214 PANTHER RING-H2 FINGER PROTEIN ATL67 137 214 IPR044289 GO:0016567|GO:0016740
Aip04g02941 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 186 IPR013083 -
Aip04g02941 214 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Aip04g02941 214 SUPERFAMILY RING/U-box 133 188 - -
Aip04g02941 214 SMART ring_2 140 181 IPR001841 -
Aip04g02941 214 Pfam Ring finger domain 139 182 IPR001841 -
Aip04g02941 214 PANTHER RING-H2 FINGER PROTEIN ATL67 3 83 - -
Aip04g02941 214 PANTHER RING-H2 FINGER PROTEIN ATL67 137 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02941 Aip-Chr4 122177348 122177992 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02941 140 212 C3H Transcription Factor Family AT2G35910 58.904 3.07e-24 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02941 - - ath:AT3G61550 176.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02941 04 122177348 122177992 Aip02g00192 02 2850052 2850705 PCT