Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02917 ATGAATGATTCTGAGATAATGCCTCCTCATCATCAAATATGTTTCTTTCAGGTTCTTGTTCACAACAAGTTTCACCAAAAGCTGATGGTTCCTAAAGGTGCAAATGAATATTGGAAAAGAATCTCAAACCCTATAAAGTTGGTGTTACCTTATGGTGTTGAAAGGAAAGTGAATTGGACCAAAAGAGGAGAAAATATTTGGTTGGAACAAGGTTGGAAAAAGGTTGTGGAGTTGTGTGGTTTGAGTTACGAGTGGTTGTTGACTTTTGACTACAATGGAATGTCTCGTTTTGAAGTCAAAGTATATGATACCACTACTTTAAGGGTAGCTTATTATAAGGAGTATGATGTTGAGAATAACAAAGATGTTGATGAAACTGAGAACGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGAGTTTGTTCAAGAACACTTCAAGAGAAAGAAGACCAACAAAGTTAATGGGAGCAATAGGAATCCCAGTTTCAAGATTCGAATTCAAGAATCATATGTTGGGTCAACATGCGTGGCAATACCAGCAACGTTTGAAAGGAAGCATTTGGAGGAAGGACCGATTCGCATGATTGTGGGTAATAGAGCTTGGACTGTGTGCTACAAAACTTGGAGAGGAAGGGCCAGATATCGCAAACACAAATTGCAAAGTGGGTGGCTCAGATTTAGAAGAGAGAACAATTTAGCGGTTGGTGATGTTTGTGTCTTTGAGTTAACTAGCGAATTTCCTCAGACAATGATTGTCAGAGTGCAGAGTGGATGA 789 0.3853 MNDSEIMPPHHQICFFQVLVHNKFHQKLMVPKGANEYWKRISNPIKLVLPYGVERKVNWTKRGENIWLEQGWKKVVELCGLSYEWLLTFDYNGMSRFEVKVYDTTTLRVAYYKEYDVENNKDVDETENDDDDDDDDDDDDDDDEFVQEHFKRKKTNKVNGSNRNPSFKIRIQESYVGSTCVAIPATFERKHLEEGPIRMIVGNRAWTVCYKTWRGRARYRKHKLQSGWLRFRRENNLAVGDVCVFELTSEFPQTMIVRVQSG 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02917 262 Pfam B3 DNA binding domain 172 259 IPR003340 GO:0003677
Aip04g02917 262 PANTHER B3 DOMAIN-CONTAINING 12 157 - -
Aip04g02917 262 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 12 157 - -
Aip04g02917 262 SMART B3_2 15 105 IPR003340 GO:0003677
Aip04g02917 262 SMART B3_2 167 260 IPR003340 GO:0003677
Aip04g02917 262 MobiDBLite consensus disorder prediction 121 143 - -
Aip04g02917 262 Gene3D - 144 261 IPR015300 -
Aip04g02917 262 SUPERFAMILY DNA-binding pseudobarrel domain 162 260 IPR015300 -
Aip04g02917 262 CDD B3_DNA 165 259 IPR003340 GO:0003677
Aip04g02917 262 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 160 250 - -
Aip04g02917 262 ProSiteProfiles B3 DNA-binding domain profile. 166 262 IPR003340 GO:0003677
Aip04g02917 262 PANTHER B3 DOMAIN-CONTAINING 160 250 - -
Aip04g02917 262 Gene3D - 7 106 IPR015300 -
Aip04g02917 262 SUPERFAMILY DNA-binding pseudobarrel domain 12 106 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02917 Aip-Chr4 121088732 121090317 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02917 100 247 REM Transcription Factor Family AT1G49480 28.488 1.46e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aip04g02917 B3 3e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02917 - - ahf:112718388 426.017