Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02916 ATGGAAGATTACGCTGCCAGCAGCGATGATGAATACCGTTACTCCGATCCGGAGGACTCCGTCGACGCCTTCGATAACGATGATAACGATTATGAATTAGTCTCTTCCAAGGGTCCCTCTACTCAGGTGATTACGAAGGAGTCATTGCTAGCTGCACAGAAGGAGGATTTGCGCAGGGTGATGGACATGCTATCGGTGAGAGAGCAACATGCACGAACCCTGCTTATTTTTCATCGTTGGGATGTGGAGAAGTTGTTTGCCGTGTATGTAGATAGGGGAAAACATTTTCTGTTTTCTGAAGCTGGTGTTACAGTGGATGAACATCGCGACGACTCTAATTCATCAGCTGCTCCTTTGACAATAATGTGCGAAATTTGCATAGAGGATGTTCCTACTGATGAAACAACAAAAATGGACTGCGGTCACTGTTTTTGCAACCCCTGTTGGACAGAGCATTTTATTGTCAAGATAAATGAGGGTCAAAGTAAGCGAATCAGATGCATGGCACACAAATGTTATTCCATTTGTGATGAAGCTGTTGTCAGAACTCTTCTCAGCAAAAAGCACCCCGATATGGCAGAGAAATATGAACGCTTTCTTCTTGAATCCTATATTGAAGACAACAAGAGAGTTAAATGGTGTCCTAGTGCGCCTCATTGTGGGAATGCAATACGTGTTGAGGACGATGAATTATGTGAGGTAGAATGTTCATGTGGTTTACAGTTTTGCTTTAATTGCTTGTCAGAAGCACATTCCCCATGCTCATGTTTGATGTGGGAGCTTTGGGCCAAAAAGTGTCAAGATGAATCAGAAACTGTTAATTGGATAACAGTTCATACCAAGCCTTGTCCAAAGTGCCACAAACCGGTCGAGAAAAATGGTGGTTGTAACTTGGTTAGCTGTATCTGTGGTCAAGCTTTTTGTTGGTTGTGTGGTGGAGCTACCGGTCGAGAGCATACCTTGTCAAGCATTGCTGCTCATAGCTGTGGTCGCTATGAAGAGCAAGAAAAAACAGCTGAAAGGGCAAAGAGGGATCTGTATCGTTATATGCATTATCATAATCGTTACAAAGCTCACACAGATTCCTTTAAGCTTGAGAGTAAACTGAAGGAGACTATACAAAAGAGGATTGCTGTCTCAGAAGAAAAACATTCTACGCTTAGGGATTATAGTTGGGTAAATAATGGGCTCTCTAGACTTTTCAGATCTAGGCGTGTCCTATCATATTCATATGCATTTGCGTTTTACATGTTTGGTGACGAGCTATTTAAGGAAGAAATGACAGAAGCTCAAAGGGAAATAAAACAGAATTTGTTTGAGGATCAGCAGCAGCAGCTTGAGGCAAACGTTGAAAAGCTCTCCAAAATTTTGGGGGAACGTTTTCAAACTTTTAAATATGATAAAGTCATGGAGATAAGGATGCAGATAATCAATCTGACCACTATCATTGACAAACTTTGTCAAAAAATGTATGAGTGTATTGAGAATGATTTACTGGGTTCTCTCTATATTGGTGTTCACAACATTGCTCCATACAAGTCAAAGGGGATCGACAAGGCATCAGAACTTTCACTTTGTTGGACAAATGAGGCCAATAATACCGCCATTTTTTAA 1614 0.4133 MEDYAASSDDEYRYSDPEDSVDAFDNDDNDYELVSSKGPSTQVITKESLLAAQKEDLRRVMDMLSVREQHARTLLIFHRWDVEKLFAVYVDRGKHFLFSEAGVTVDEHRDDSNSSAAPLTIMCEICIEDVPTDETTKMDCGHCFCNPCWTEHFIVKINEGQSKRIRCMAHKCYSICDEAVVRTLLSKKHPDMAEKYERFLLESYIEDNKRVKWCPSAPHCGNAIRVEDDELCEVECSCGLQFCFNCLSEAHSPCSCLMWELWAKKCQDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTLSSIAAHSCGRYEEQEKTAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKETIQKRIAVSEEKHSTLRDYSWVNNGLSRLFRSRRVLSYSYAFAFYMFGDELFKEEMTEAQREIKQNLFEDQQQQLEANVEKLSKILGERFQTFKYDKVMEIRMQIINLTTIIDKLCQKMYECIENDLLGSLYIGVHNIAPYKSKGIDKASELSLCWTNEANNTAIF 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02916 537 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 209 IPR013083 -
Aip04g02916 537 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 6 506 IPR031127 GO:0004842|GO:0016567
Aip04g02916 537 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 6 506 - -
Aip04g02916 537 SUPERFAMILY RING/U-box 194 262 - -
Aip04g02916 537 Gene3D - 252 499 - -
Aip04g02916 537 MobiDBLite consensus disorder prediction 1 28 - -
Aip04g02916 537 SUPERFAMILY RING/U-box 121 206 - -
Aip04g02916 537 Pfam IBR domain, a half RING-finger domain 194 256 IPR002867 -
Aip04g02916 537 Pfam Ariadne domain 333 534 IPR045840 -
Aip04g02916 537 ProSiteProfiles Zinc finger RING-type profile. 123 171 IPR001841 -
Aip04g02916 537 SUPERFAMILY RING/U-box 275 316 - -
Aip04g02916 537 ProSiteProfiles TRIAD supradomain profile. 119 333 IPR044066 -
Aip04g02916 537 SMART ibrneu5 194 256 IPR002867 -
Aip04g02916 537 SMART ibrneu5 264 329 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02916 Aip-Chr4 121050891 121052504 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02916 61 523 ARIADNE family AT2G16090 71.828 0.0 711
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02916 K11968 - gmx:100783343 947.577