Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02911 ATGGCAAATGCACACGCATTAGAGGAAGAGGAAGAAGAAGGAGAGGGACACGAAGCGGTGGAGGAAATCCAACGCGTCATTGAATCGGTTGCGCAATTCGGACAGTATAGAAAGACACAGAGAAAAGAATGTCACAACTTGGTGCGGCGGTTCAAACTCATGCTGCCTATCGTGGAAGAGCTCCGAGATATTCCGGAGCCCTTCCACGAAAACGGCATCGTTTGGTTGAAGAAACTTAGGGATGCACTCTTGTTTGCCAAGGAACTCTTGAGGTTATGTAGCCAAGGAAGCAAAATTCTCCTTGCAATGGAGACGGAGGCATATATGATAAAATTTCAAGGTGTTTATGAGAAATTGAGTCAAGCATTTGAAGATGTGCCTTGTGAGGAATTAGGAATCTCAGATGAAGTCAGAGAACAGATTGAGCTGATGCACACTCAGCTGAAGCGGGCGAGGAGGAGGACGGATACGCAGGACATGGAGCTTGCAATGGATATGATGGTGGTGTTATCCGGCGACGAGCAACGGAGCGCCGACAGCGCCATCATTGAGAGGCTAGCAAAGAAACTAGAGCTTCAAAGGGTTGAGGATCTTAAGATAGAAACCTTGGCGATCAAGCAACTGGCTGATGAAAGAAAAGGGCAACAAGTAGATAGCACCAAGAAAATAATTGGCCTCCTTAACAAGTTAAAGAGAATTGCTGGCATGGAAGAAACAAGTGTTCTTGATGATCCTGTCCTGCCTAGGGTGCTTGTGAAGAGCATATCTTTGGTTATTCCTCATGAGTTTCTTTGTCCTATAACCCTTGAAATCATGACAGATCCTGTTATTATTGCAAGTGGACAGACATATGAAAGGGAAAGCATAGTGAAATGGTTTGAATCCAAACATAATACCTGCCCAAAGACAAGGCAAACCCTTGATCACTTGCAACTAGCACCAAATTGTGCCTTAAAGAGCATAATTGAAGAATGGTGTGAAAAAAACCACTTCAAACTACCAAAGAAGTTCAAATCTTCAAGCCAAAACAATGGTCCAATTATCAACATACAAGAAATCCCACCTTTGGTTGAAAGCCTATCATCAATTCATTTAGNNNNNNNAGAAAGCCCCGAGAATCGGATCTTGGTTGCTGAGCATGGAGGAATACCACCATTGATACAAATCTTATCTTATCCGGATTCAAAGATTCAAGAACATGCTGTGACAGCATTGTTGAATCTTTCCATTGATGAGAAGAACAAGAGGCTAATATCAAAAGAAGGTGCTATTCCAGCAATCATAGAAGTTTTGGAGAATGGAAGCATTGTTGCTAAGGAAAATTCAGCAGCATGTTTGTTTAGTCTCTCAATGCTTGATGAGAACAAAGAACTTGTGGGATTGTCAAATGGGATTCCACCATTGGTGAAACTTTTGAGGAATGGAACAGTTAGAGGGAAAAAAGATGCTATTACAGCACTCTTTAATTTGTCCCTTAACCATGCAAATAAAAGTCGGGCAATTAGTGCTGGTATTGTCGCACCTTTGCTTCAGTTGCTTAAAGACACAAAAACGAACATGATTGACGAGGCGCTGTCCATTCTGTTACTCCTCTCCTCGATTTCCGAGGGGAGGCAGGAGATTGGACAACTGTCATTTATCGAGACACTTGTTGAGTTCATTAAGGATGGGACCCCCAAGAACAAGGAGTGTGCTGCTTCTGTGCTCCTGGAGTTGTGTACAAATAACTACTCTTATATACTTGCAGCACTTCAGTATGGAGTTTATGAGCATTTGATTCAGATCAAAGGGAGTGGAACAAATAGAGCACAGAGGAAAGCAAATGCTCTCTTAGATCTTATAAGTAGGAGTGAGCAAATTTAG 1863 0.423 MANAHALEEEEEEGEGHEAVEEIQRVIESVAQFGQYRKTQRKECHNLVRRFKLMLPIVEELRDIPEPFHENGIVWLKKLRDALLFAKELLRLCSQGSKILLAMETEAYMIKFQGVYEKLSQAFEDVPCEELGISDEVREQIELMHTQLKRARRRTDTQDMELAMDMMVVLSGDEQRSADSAIIERLAKKLELQRVEDLKIETLAIKQLADERKGQQVDSTKKIIGLLNKLKRIAGMEETSVLDDPVLPRVLVKSISLVIPHEFLCPITLEIMTDPVIIASGQTYERESIVKWFESKHNTCPKTRQTLDHLQLAPNCALKSIIEEWCEKNHFKLPKKFKSSSQNNGPIINIQEIPPLVESLSSIHLXXXESPENRILVAEHGGIPPLIQILSYPDSKIQEHAVTALLNLSIDEKNKRLISKEGAIPAIIEVLENGSIVAKENSAACLFSLSMLDENKELVGLSNGIPPLVKLLRNGTVRGKKDAITALFNLSLNHANKSRAISAGIVAPLLQLLKDTKTNMIDEALSILLLLSSISEGRQEIGQLSFIETLVEFIKDGTPKNKECAASVLLELCTNNYSYILAALQYGVYEHLIQIKGSGTNRAQRKANALLDLISRSEQI 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02911 620 Gene3D - 16 129 IPR036537 GO:0007166
Aip04g02911 620 Pfam U-box domain 259 329 IPR003613 GO:0004842|GO:0016567
Aip04g02911 620 Coils Coil 134 154 - -
Aip04g02911 620 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 259 333 IPR013083 -
Aip04g02911 620 PANTHER U BOX DOMAIN-CONTAINING 14 618 - -
Aip04g02911 620 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 463 505 IPR000225 GO:0005515
Aip04g02911 620 CDD RING-Ubox_PUB 263 305 IPR045210 -
Aip04g02911 620 SUPERFAMILY ARM repeat 362 616 IPR016024 -
Aip04g02911 620 SMART arm_5 534 574 IPR000225 GO:0005515
Aip04g02911 620 SMART arm_5 452 492 IPR000225 GO:0005515
Aip04g02911 620 SMART arm_5 411 451 IPR000225 GO:0005515
Aip04g02911 620 SMART arm_5 370 410 IPR000225 GO:0005515
Aip04g02911 620 SMART arm_5 493 533 IPR000225 GO:0005515
Aip04g02911 620 Pfam Armadillo/beta-catenin-like repeat 370 409 IPR000225 GO:0005515
Aip04g02911 620 Pfam Armadillo/beta-catenin-like repeat 453 491 IPR000225 GO:0005515
Aip04g02911 620 SUPERFAMILY RING/U-box 258 333 - -
Aip04g02911 620 Gene3D - 337 619 IPR011989 -
Aip04g02911 620 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 15 14 618 - -
Aip04g02911 620 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
Aip04g02911 620 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 381 423 IPR000225 GO:0005515
Aip04g02911 620 SMART Ubox_2 262 325 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02911 Aip-Chr4 120911884 120915030 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02911 20 620 U-box Gene Family AT5G42340 61.075 0.0 709
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02911 - - adu:107485837 1098.57