Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02899 ATGTTCTATGGTGTGGACCCTTCTGATGTGAGGCACCAAATAGAAACCTTTGAGGATGCATTCAGGAATCATGAAGGGAAATTTGGAGGAGACAGTGAAAAGGTCAAGCGATGGAGAGAAGCCTTAATACAAGTTGCCAGTTACGCTGGATGGGACTCCAACAATCAGCAAGATGAGGCGACGATCGTCGAAAGCATTGCCCAACACATACATACAAAGCTCTTCCCAAAATTGCCACCCTCTGATGAAAAACTTGTTGGGATTGCTTCAAAGGTGGAGGAAGTGATTAAACTTGCAGATATTAGGGTGAATGATGTCCGTTTTATAGGCATATGGGGCATGGGTGGCATTGGTAAGACAACTATCGCCCATGCAGTCTATAAATCTATGGAAGATAACGAATTCAAAGTTTGTTGTTTTCTTGAAATTATTAGAGAGAACTGCAAGAAAAAGGGATTAGTAGTCCAAGTACAAATGGACCTTCTTGCTCAATGTCACATTAAGTGTAAGTTAGATAATGAGAATCAGGGGAGAGAAGTAATAAAAAACGCTTTATGCAAAAAGAAAGTTCTCCTTGTTCTTGACGACGCAAGTGATATAAGCCAATTGGATAATTTGGCTGGAAAGCGAGGTTGGTTTGGTCTTGGAAGTAGAGTAATAATTACAACTAGAGATATGCACCTACTTAAAAGGCATGCAGTGCATGCAACTTATGAGGTTCAAACTTTAGTCCAAGAAGAAGCCCTTCGTTTCTTTTGTTTAAATTCCTTTAATCAGGACCAACCTAATGAAGGTTATTTGGAAATATCCCAAGAAATTGTTGAGCATTCCGGTTGTCTACCATTAGCACTTAAGGTATTGGGTAAACATTTTAATGGAAGCAGAGACATCGGTTATTGGCGTAGTGAGTTGGAAAAACTAAAAAATGGTCTAGATCTAGATATTGGAAAAAGATCTTTGGTTACTATAGTATCTGATAAGTTGGAGATGCATGACTTGCTACAAGAAATGGGTAGAGACATTGTAAACCAGTCTCCAAATGATGGTAGCCAGCTTAGCAGGTTGTGGTCTGCCAATCATATCAATCGTGTACTCAAACAGAACAAGGGAGTTAAAGAAACAGAGAGTATCTTCATAAAGTTTTGTGGGGACGGACTTGATGTGCGCGGGAGAAGTTTAGTTTTCTCATCAAATATGTGCAAGCTGAAGTTGCTCATTTTAGATGGTGTCACAGCTCACATAATCACCAATATTCCTACTTCCTTAGAAGTTCTTCGCTGGACAGAATGTCCAATGGAAAGTTTGCCCCTTAAGGAAGATGAACACTATGAACTTGTTGAAATTGATTTGTCCAGCAAAATTAAACACGTGTGGCATGGCAAAAAGCTGAAGCAAACGCCAGATCTTTCTGGGGCTCCCAATCTGGAAAAACTTCATCTTTCAAGTTGTTGTGAGCTGAATGATATTCATTCATCCCTGGCAGTCCACAAGAGCCTTGTTGAATTGAATTTAAGAGAATGCCCAAAGCTTAGAACTCTTGCAGTTGGTAAATTGGAGATGAGTTCCCTCCGCGAACTTGATCTTAGCCAATGCGTGAATTTGAAGAAACTCCCAGAATTTGGAGAATGCATGACAAAGTTAGCATGTCTTTCTTTGTGTGATACACCCATAGAAGGGCTACCCACGACCACGAGCACTGGATGGTTAAAGAGTCTCTCTGAGTTGCACTTAACTATATGCAGGAAACATTGTACTTTCAAAGCTACATGTATGCCTCTGCGCACAAATCCTGGATGCAAGTCATGCAGCGCTTGTGGCTCCTTATCATCACTTGGAACTTTAGGTGGCCTAACCACGTTGAGGTTATGGGGATGCCAATCCCCTGCCTGCTTGAATGATTCTGTTTCTGATGATTGTCCAAATCTCATTGAACTTTTGCTTTCTCTCAAGAGTCAAACCCGTTTGACCACCCTGCAATTATTCCAATGCTTTCCCAAATCTAGAGACTTGACCACTTTCGATATTGGCGAGTTAGAGTCATTGACGGATTTGGATCTATCTTATAACAAATTTGCTAGGGTTCCAATTAGTATATATAATCATCCCAAGCTAAGACGTCTGAAGCTAGATAACTGCCATAATCTGGAGGTTCTGCCAGAGCTTCCACCAAGTCTGAGAGAGTTACACGCACGGGATTGTGGATCACTGCATCCATCCAGTTGCTTATCTATATTAAAGGCGTGTTGTGTCTTTGCAGCAGAAGCAGCATCAGAGAGGGGAGATGGTGATGACGTCCTGCAAATGCAAATTCTGACGTCAGGGGAGGAAATACCGCCATGGTTTGATCGTCGGGGAGAAGATAACAGCGTATTAGTCCCATCCCCACGTTACGAAGGAAATGCCATCGCACTTGGTCTCTGTTTCCGGTTTCGCGGCAATTGGACTTCGTCATTTCCCGCACATCCTTCGCTGACCTTCTGA 2481 0.4196 MFYGVDPSDVRHQIETFEDAFRNHEGKFGGDSEKVKRWREALIQVASYAGWDSNNQQDEATIVESIAQHIHTKLFPKLPPSDEKLVGIASKVEEVIKLADIRVNDVRFIGIWGMGGIGKTTIAHAVYKSMEDNEFKVCCFLEIIRENCKKKGLVVQVQMDLLAQCHIKCKLDNENQGREVIKNALCKKKVLLVLDDASDISQLDNLAGKRGWFGLGSRVIITTRDMHLLKRHAVHATYEVQTLVQEEALRFFCLNSFNQDQPNEGYLEISQEIVEHSGCLPLALKVLGKHFNGSRDIGYWRSELEKLKNGLDLDIGKRSLVTIVSDKLEMHDLLQEMGRDIVNQSPNDGSQLSRLWSANHINRVLKQNKGVKETESIFIKFCGDGLDVRGRSLVFSSNMCKLKLLILDGVTAHIITNIPTSLEVLRWTECPMESLPLKEDEHYELVEIDLSSKIKHVWHGKKLKQTPDLSGAPNLEKLHLSSCCELNDIHSSLAVHKSLVELNLRECPKLRTLAVGKLEMSSLRELDLSQCVNLKKLPEFGECMTKLACLSLCDTPIEGLPTTTSTGWLKSLSELHLTICRKHCTFKATCMPLRTNPGCKSCSACGSLSSLGTLGGLTTLRLWGCQSPACLNDSVSDDCPNLIELLLSLKSQTRLTTLQLFQCFPKSRDLTTFDIGELESLTDLDLSYNKFARVPISIYNHPKLRRLKLDNCHNLEVLPELPPSLRELHARDCGSLHPSSCLSILKACCVFAAEAASERGDGDDVLQMQILTSGEEIPPWFDRRGEDNSVLVPSPRYEGNAIALGLCFRFRGNWTSSFPAHPSLTF 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02899 826 Pfam TIR domain 2 79 IPR000157 GO:0007165
Aip04g02899 826 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 71 315 IPR027417 -
Aip04g02899 826 PRINTS Disease resistance protein signature 108 123 - -
Aip04g02899 826 PRINTS Disease resistance protein signature 277 291 - -
Aip04g02899 826 PRINTS Disease resistance protein signature 184 198 - -
Aip04g02899 826 PRINTS Disease resistance protein signature 518 534 - -
Aip04g02899 826 Gene3D Ribonuclease Inhibitor 587 747 IPR032675 -
Aip04g02899 826 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 51 IPR035897 -
Aip04g02899 826 Pfam NB-ARC domain 103 308 IPR002182 GO:0043531
Aip04g02899 826 Gene3D - 1 70 IPR035897 -
Aip04g02899 826 SUPERFAMILY L domain-like 392 735 - -
Aip04g02899 826 Gene3D - 242 322 IPR042197 -
Aip04g02899 826 PANTHER TMV RESISTANCE PROTEIN N-LIKE 2 309 - -
Aip04g02899 826 PANTHER TMV RESISTANCE PROTEIN N-LIKE 317 739 - -
Aip04g02899 826 Gene3D - 71 237 IPR027417 -
Aip04g02899 826 Gene3D Ribonuclease Inhibitor 356 586 IPR032675 -
Aip04g02899 826 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2 309 IPR044974 GO:0006952
Aip04g02899 826 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 317 739 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02899 Aip-Chr4 120643697 120648852 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02899 86 667 WRKY Transcription Factor Family AT5G45050 25.554 1.75e-43 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02899 - - ahf:112743209 1374.38