Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02890 ATGTCGACGTCTTCCTCTGGCAAgaagtacgatgttttcattagcttcagaggcgaggacacccgtaccggcttcacaagccatctacgctctgctcttgagcgacagaagatagaaatatacatagataccaagatgaagagaggagaagaggtttggcccgaactctcccaagcaatcaagaactcacacatgtccatcgtggttttctccgaaaactatgcttcttcaaaatggtgcctgagagagctggtcaaaataatggaatgcagaagcaaacaggagcaggtagttatacctgtgttctataagacagatccgtcacacgtacggaagcagacagggagttatggggaagcacttgcgaaccttgagccagatctaaggaaagatgtgcccttccaggtggaggtgtctagttggaaaaaggctctcaacaaagctgccaatttatctggatgggaCTCTAATAAGTACAGGGAGGACGAGTCTCAACTTGTCGAGGATATTGTTAAGGATATTAGGACAAAGCTGTACCAGAAATGCCCCAATAAAATAGAAGGTGTCATTGGAAATGATGAAGTCTTTGAAGAACTTGAGTCATTGCTGAAACAGCATTCAGTAATTGGAATTTGGGGCATGGGTGGAGTAGGTAAGACAACCATTGCTAGAGCTCTGTTTGCCAAACACTTTCCCCGATATGACAGTTCATGCTTCTTGGAAGGTGTAAGAGAAAAATTTGACAGACGTGGGAAGACATACTTACTTGACAAGCTTCTCAGTTTGCTAAATGAACCAATTCATTCGTGTGATTTTGAAAAATCCTCCTCAATTAAGAAAAAGATCAGGAGTTCGAACGTTTTCATTGTACTTGATGATGTGAGTTGTGTTGACCAATTAGAAGTTTTACTTCAAGAGGTCGGTGACATACACCAACGTAGCAGACTCATTATAACGACAAGAGATAGGGACATACTTCAAGGATGGAAAGTTAATGAAATATATGAGCTCAAGGTGTTGAATGACTCTGATTCTCTAAATCTTTTTAGCTTACATGCCTTTGAGAAAGAACTTCCTGAAGAGAAATTTAAGGATCTCTCAGAAAAAGCAGTTCGTTATGCTGGCGGGCTTCCATTAGCTTTAAAAGTTTTTGGAAGATTTCTGCATACAAAAAATCTCAAGTTTTGGGAAGATGCATTGAGAAAAATCGAGAAGTATCCCCTTGATGGAGTTCAGAGGGTGTTACAAGTGAGTTTTGACGGATTGGATAAACAAGAGAAGGACATATTTTTAGACATTGCATTCTTTTTCAAGGGAGAAGATGCGGACCTTACCAAAAGGATGCTTAGCGCTAGTGGTTTGAATGCAGAATGTGGAATAGACACGCTTGTCAATAAAGCTCTAATAACAATATCATCCAACAATAAAATACGGATGCATGACTTGTTGCAACAAGTGGGTTGGAAGATAGTTAGTGAAGAATGTGAGGACCCCAGTGGACGAAGTCGACTAAGGGATAGGGAAGACGTTTCTGATGCGCTGCAATCTGAAAAAGAGGCTCCAATGGTTAAAGGCATAACATTAAACTCATTTGAAATTGATTTCGACTTGAGTGCTAATGCATTCAACAAGATGATCAATTTAAGATTTCTTAGATTCGGTAAATCAATATCATGGAATGTGTCCCATCTTGAACTTCTCAAGTCCATTTCCAATAAGTTGGTGTACTTTGAATGGAATGGATACCCTTTTAAGTCTCTTCCACCAAAATTTGGTGCTAAGCTGCTCTTTGAGATTCACTTGCGGGACAGCAATGTTGAAGAACTTTGGCAGCAAGTGCAGGATCTTGAGAATTTAGAGAAAATTGACCTAAGTGGATGTAAAAAGTTGATGAAGCTTCCAAATTTGTCTAAGGCGCCTAAACTTAAATGGGTGTATCTCTCAGGTTGTGAAAGTTTATGTGCCATACATGTATCTGATTTATCTGTGGATAAACTTGTTACTTTGAAGATGGATGGGTGCAAAAAACTAGAGAGACTTGAATGTAAGAAGCATTTACCATCTTTGAAGGAAATCAATCTTGATGGCTGCTTAAGTCTTGAGGAATTTTCAGTGACATCAGATTTACTTGAAAGGTTGGATTTAAGCAATACAGGAATCAAGAAATTGTGCTCATCAATTGGGCGTCTTCACAAGCTTGTGTGGCTCAATCTTGAAGGTTTAGGACTTGAGAATCTTCCAGATGAATTATCTTCCCTGAAATCTCTTGAGGAGCTTAAAATATCTAGCAATGAATCGATTAACAAACAGAAGCTACATGTCCTATGCAGCGGCCTACAGGCTTTAAAAATACTACATTTGAAGCAATGTGATAAACTCTGTGAACTCCCTGACAACATCAGTTTCTTATCTCAGCTTAATGAATTAAGGCTAGATGGAAGCAGTGTGGAGAAGCTGCCGGCAAGCATCAAGAATCTTAAGGAGTTGGAGATTCTGTCCTTAAAGAATTGCTGCAAGATTCGGTCTCTACCAGAGCTCCCACCATTAATCAAAGAGTTTTGGGCAGATAATTGCACATCCTTGGAGTCGGTATCGACTTTGATGAGTTTTTTAGGGAAAATGAAAGGAAAGGACACACTCATTTCATTAAAAAAATGCACGAAACTGAGTGAAAATTCAGTTGAGATCATTGAGGAATGCGCCCAGTTAATAATGATGAACGATGCATTTTTTAATGCATCAAACTGCTATAAATACAATACAAGAGTTGGGGTTTGTTTTGCAGGAAGCAGAGTCCCAAGGGAGTTCGCATATCGAAGAACTGAGTCATCCTCCATAACCATTCAACTTCCTGAGCCTTCCAACTGTCTGGGTTTCATTTACTGTGTGGTTCTTTCAAAGGGGAAGAGTAATGTTAACATCCGATGTCAATGCTACTCGGCAGATAGCAGAAAGGTAGGATGCAGTGGTATATTAGATGGCAATATTATCAGTGATTCGGCGGATCATGTTTATGTATGGTATGATGCGTTCCATTGTCGCAGCATTCTTGAAAATCATGAAGTTCAACTTCGTTTTCAATTCTGTGAAACAACTGATAATGGGGATAACCTTGTTGGATTGAGTAGTGTCAAAGAGTGCGGGGTCCAGCCGATACGCATCTCAGACTTAGACAGTTGTTTACTGTCTCAGGGATTGAAGGAGGAGTTGACATTGGAGTTGGGAAAGAAGTTGGGATTGGTCTTGGATATTATGCAGAGATATGCAAAAGTAGAGTCCAGATTCTTTCTTGCATTGGAGAATAGATGTGATATAGAAATATCATTGATGTTAGAGTATGCAGAACGATTTAGTGCAATGTCAGCCTTACTGAAGAAGGAAAGCAATGGCGTAGGAACTCAGATACCAAATCGAGAAGGGGAGCAGAGTGTACATGTTCATGTGACCTTCTAG 3453 0.3426 MSTSSSGKKYDVFISFRGEDTRTGFTSHLRSALERQKIEIYIDTKMKRGEEVWPELSQAIKNSHMSIVVFSENYASSKWCLRELVKIMECRSKQEQVVIPVFYKTDPSHVRKQTGSYGEALANLEPDLRKDVPFQVEVSSWKKALNKAANLSGWDSNKYREDESQLVEDIVKDIRTKLYQKCPNKIEGVIGNDEVFEELESLLKQHSVIGIWGMGGVGKTTIARALFAKHFPRYDSSCFLEGVREKFDRRGKTYLLDKLLSLLNEPIHSCDFEKSSSIKKKIRSSNVFIVLDDVSCVDQLEVLLQEVGDIHQRSRLIITTRDRDILQGWKVNEIYELKVLNDSDSLNLFSLHAFEKELPEEKFKDLSEKAVRYAGGLPLALKVFGRFLHTKNLKFWEDALRKIEKYPLDGVQRVLQVSFDGLDKQEKDIFLDIAFFFKGEDADLTKRMLSASGLNAECGIDTLVNKALITISSNNKIRMHDLLQQVGWKIVSEECEDPSGRSRLRDREDVSDALQSEKEAPMVKGITLNSFEIDFDLSANAFNKMINLRFLRFGKSISWNVSHLELLKSISNKLVYFEWNGYPFKSLPPKFGAKLLFEIHLRDSNVEELWQQVQDLENLEKIDLSGCKKLMKLPNLSKAPKLKWVYLSGCESLCAIHVSDLSVDKLVTLKMDGCKKLERLECKKHLPSLKEINLDGCLSLEEFSVTSDLLERLDLSNTGIKKLCSSIGRLHKLVWLNLEGLGLENLPDELSSLKSLEELKISSNESINKQKLHVLCSGLQALKILHLKQCDKLCELPDNISFLSQLNELRLDGSSVEKLPASIKNLKELEILSLKNCCKIRSLPELPPLIKEFWADNCTSLESVSTLMSFLGKMKGKDTLISLKKCTKLSENSVEIIEECAQLIMMNDAFFNASNCYKYNTRVGVCFAGSRVPREFAYRRTESSSITIQLPEPSNCLGFIYCVVLSKGKSNVNIRCQCYSADSRKVGCSGILDGNIISDSADHVYVWYDAFHCRSILENHEVQLRFQFCETTDNGDNLVGLSSVKECGVQPIRISDLDSCLLSQGLKEELTLELGKKLGLVLDIMQRYAKVESRFFLALENRCDIEISLMLEYAERFSAMSALLKKESNGVGTQIPNREGEQSVHVHVTF 1150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02890 1150 CDD AAA 190 326 - -
Aip04g02890 1150 SMART till_3 9 151 IPR000157 GO:0007165
Aip04g02890 1150 PANTHER NB-ARC DOMAIN PROTEIN 8 940 - -
Aip04g02890 1150 Gene3D - 4 178 IPR035897 -
Aip04g02890 1150 ProSiteProfiles TIR domain profile. 8 178 IPR000157 GO:0007165
Aip04g02890 1150 SUPERFAMILY L domain-like 478 921 - -
Aip04g02890 1150 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 154 IPR035897 -
Aip04g02890 1150 Pfam TIR domain 9 183 IPR000157 GO:0007165
Aip04g02890 1150 Gene3D - 339 423 IPR042197 -
Aip04g02890 1150 Pfam NB-ARC domain 197 412 IPR002182 GO:0043531
Aip04g02890 1150 PRINTS Disease resistance protein signature 208 223 - -
Aip04g02890 1150 PRINTS Disease resistance protein signature 281 295 - -
Aip04g02890 1150 PRINTS Disease resistance protein signature 374 388 - -
Aip04g02890 1150 PRINTS Disease resistance protein signature 614 630 - -
Aip04g02890 1150 Gene3D Ribonuclease Inhibitor 709 907 IPR032675 -
Aip04g02890 1150 Gene3D - 179 334 IPR027417 -
Aip04g02890 1150 Gene3D Ribonuclease Inhibitor 527 708 IPR032675 -
Aip04g02890 1150 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 433 IPR027417 -
Aip04g02890 1150 Pfam C-JID domain 927 1050 IPR045344 -
Aip04g02890 1150 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 940 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02890 Aip-Chr4 120512891 120518670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02890 5 809 WRKY Transcription Factor Family AT4G12020 31.197 2.41e-88 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02890 - - aip:107635073 2224.9