Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02875 ATGGGGTTCCCCGTAGGCTACACGGAAGTCCTCGTCCCAAACATCTTCCTCCGCCTCCTCACCTTCCTCGCCGCCCTCCGAAACCTCGTACTCTCCCTCTTCCGCCTCCTCGGCCTCTCCGAACTCCTCGACACTACCACCACCGACCCCTACCCTCTCTCTTGGACCCAGGCCCACCAGGCCCAATTCCGGCCCACCACCACCACCACCACAACCACCATCCCTTCCCTCTCCGCTATCCTCATCCGCGAATTCCTCCCCGTCATGAAATTCAGCGACCTAGCCGGCGCCGGAGATTTCATTCCGGCCACGACGGAGAACGGATGCGCTGTTTGCTTGAGCGAATTCTCCGGGGAAGACGAGATCAGGTGTATGGCGAACTGCAGACACGTGTTCCATCGCGGTTGCGTGGACCGTTGGATGGACCACGATCAAAGGACTTGCCCTCTCTGTAGGACTCCTTTCGTTCCCGATCACAAGGTGAACGAGTACAACCAACGCCTCTGGGAAGCTTCTGGAGTAGCGGAATTCTACGCAGATTAA 543 0.5875 MGFPVGYTEVLVPNIFLRLLTFLAALRNLVLSLFRLLGLSELLDTTTTDPYPLSWTQAHQAQFRPTTTTTTTTIPSLSAILIREFLPVMKFSDLAGAGDFIPATTENGCAVCLSEFSGEDEIRCMANCRHVFHRGCVDRWMDHDQRTCPLCRTPFVPDHKVNEYNQRLWEASGVAEFYAD 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02875 180 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 178 - -
Aip04g02875 180 ProSiteProfiles Zinc finger RING-type profile. 109 152 IPR001841 -
Aip04g02875 180 SUPERFAMILY RING/U-box 93 161 - -
Aip04g02875 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 157 IPR013083 -
Aip04g02875 180 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 178 - -
Aip04g02875 180 SMART ring_2 109 151 IPR001841 -
Aip04g02875 180 Pfam Ring finger domain 109 152 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02875 Aip-Chr4 120319362 120320335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02875 1 175 C3H Transcription Factor Family AT1G63840 46.023 5.99e-50 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02875 K16281 - gmx:100813224 191.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02875 04 120319362 120320335 Aip02g00098 02 1766568 1767395 PCT