Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02873 ATGGGAGGTTGCTGTTGTTCTGCCAGAAAACCTCATCTGCATGGAACACCAGTTTATTACTATTGCCCGCCAACTTTGGAGGAGCGCGAGTTGTTAACCTCTAATGATGCTTCTGCTGCTTCACTCACTGCTGGATTGCTGATTGGCTTAAACCTGGATGCGTCCACACCCGATACTTTCCAGCCGCCTCCTGCGCCTCTGCCTTATGATGTGGTCTTTGGAGGTTCTGCATCAACAGATTCTGAGTCTGGTAGAGAAACCGTTAGTGGTAGTAGTTTCGAGACTTTAATTGCACGAGAAGATCTCGAAGAAGCAGAAAGTAAAGTTAAAGCTCAAGAAAATTCTGAGCCTATATCTCCCAAGAAGGCAGAGCTATTAAAATCAAATCAGACTCAAGTATTACTGACAGAAGAAGAGGATGTTTGTCCAATTTGTCTCGAAGAATATGATGTTGAGAATCCCAAAAATCTGACGAAATGCGAGCACCACTTTCACCTGTCTTGCATTCTTGAGTGGATGGAAAGAAGTGACTCCTGCCCGATATGCGATCAGGAAATGATATTTTGA 567 0.4409 MGGCCCSARKPHLHGTPVYYYCPPTLEERELLTSNDASAASLTAGLLIGLNLDASTPDTFQPPPAPLPYDVVFGGSASTDSESGRETVSGSSFETLIAREDLEEAESKVKAQENSEPISPKKAELLKSNQTQVLLTEEEDVCPICLEEYDVENPKNLTKCEHHFHLSCILEWMERSDSCPICDQEMIF 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02873 188 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHB1A-RELATED 1 188 - -
Aip04g02873 188 SUPERFAMILY RING/U-box 135 186 - -
Aip04g02873 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 187 IPR013083 -
Aip04g02873 188 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 188 - -
Aip04g02873 188 Pfam Ring finger domain 141 182 IPR001841 -
Aip04g02873 188 ProSiteProfiles Zinc finger RING-type profile. 142 183 IPR001841 -
Aip04g02873 188 SMART ring_2 142 182 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02873 Aip-Chr4 120275177 120279296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02873 1 188 C3H Transcription Factor Family AT4G00335 54.787 3.93e-69 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02873 - - gmx:100792561 322.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02873 04 120275177 120279296 Aip02g00093 02 1616437 1619217 PCT