Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02870 ATGATGTGTAGTGGTGAGCCTTTGGATTTGTATAAGCTATTCATGGTGGTGAAGGAGAAAGGTGGCTATGATGCTGTTTGTAAGAATATGCTGTGGGATTTGGTTGCGGAAGAATATGGTTTAGGTTTAAATGTTGGTTCATCTATTGAACTTGTTTATAGTAAGCACTTGAGTACACTAGAGACATGGCTGAAGAATGTTGCTGATAGTAAGTTCCCTGAGTGTGGTTTAATGGATGATAGGGTTAGTTTTGGTAAGAAGTTGATGGAGGTGCAGGCTGATTTCTTGTTAGATGTTTATAGCGAGGAAGGTGCAGGGGATAAAATTAAGACAGCATGTGATTTCGTGGATGGAAGGAAGTTGTGTGGAACTAATAGGGTTAGGGGATTGAATCCTGAGCTCAGCGGTGCAAAGAAAATTGTTGATTTGAATGCACTGGACCATAAGATGAATGGGCCTAGTATTGGAAGCTTTTGCAGCAATAACTTTTCAAATAATTCAAGTGATATACAGAACCATTTGAATGAAATTAAGACATCAACAGTGGACATATCTGATGAAGCAAACATAATGCCTACATTGTCGGAAGAAGGTGATAGTTGTGATAAAAATGATGGTCATGACGACGACGACGATGTGATGGTATTGGATCCATCCGATAGTTGTGATAAAAATGATGGTCATGACGACGACGACGACGATGTGATGGTATTGGATCCATCCACTGTTAATAAAGAGAGCTTTGGTCGAAAGAGGAAGAGAGAGTCTATGTCTGAAATGCTAAGCTGGCTTACTGGTATTGCTAAGAATCCTTGTGATCCTGCAGTTGGTTCAATGCCCGAAAAGTCAAAGTGGAAGTCTTATGGTAGTGAGGAGATTTGGAAGCAGGTTTTGCTGTTTCGGCAAGCCACCTTTTTTAGCAGTGATCACGTCAGTTGGCAGGGTCAGAAGATGCATCCTTGCATGTATGATGATCAGGTTGGGGCAAACTACAACCTTAGAGAGAGGTTGAAATCTGACAAGAATTTAACTTGTGGTGTCTCTTCAAATATGAGAGGAATACAGGGAGGTTCCGAGAGAAACCCAAGTCCTCATTCAGAAGTGGAGAAACTGTTACTTGACCAATGTAGCATGGTGCCCATTCCTGTTGGGCCATCCCATCAAGCTGAAGTGCCCGAATGGACTGGTGTGGCAATTGAAAGTGATTCCAAGTGGTTGGGAAGCCAAATATGGCCATCAGCAGAGATAAAGTCCAAAGTCATAGAAAGAGATCCTATCGGAACAGGAAGGAAAGATTCATGTGGCTGTGAAGTACAAGGTTCTGTTGAGTGTGTCCGGTTCCACATTGCTCAGAAAAGGGCTAAAGTTAAGTTGGAATTGGGTGTGGCTTTTTATCTGTGGAATTTACACAAGACAGGCGAAGATGTTAGGCGATTGTGGACAGAAGACGATGAGAAGAAGTTCAAGGATGTGCGCAGAGGATACCAAAATAGGAATACTCCGGATGACATTGACAGTGATGATGATGAATCAGAATATGGTCCATTGAAGAATGCTTTTGGACATCAAACACACAAATCGCGCAACATCACCTTATTGTCTCCCAAAAAGCCCAAGAAAACGGAACATAGCAAGTGA 1638 0.4206 MMCSGEPLDLYKLFMVVKEKGGYDAVCKNMLWDLVAEEYGLGLNVGSSIELVYSKHLSTLETWLKNVADSKFPECGLMDDRVSFGKKLMEVQADFLLDVYSEEGAGDKIKTACDFVDGRKLCGTNRVRGLNPELSGAKKIVDLNALDHKMNGPSIGSFCSNNFSNNSSDIQNHLNEIKTSTVDISDEANIMPTLSEEGDSCDKNDGHDDDDDVMVLDPSDSCDKNDGHDDDDDDVMVLDPSTVNKESFGRKRKRESMSEMLSWLTGIAKNPCDPAVGSMPEKSKWKSYGSEEIWKQVLLFRQATFFSSDHVSWQGQKMHPCMYDDQVGANYNLRERLKSDKNLTCGVSSNMRGIQGGSERNPSPHSEVEKLLLDQCSMVPIPVGPSHQAEVPEWTGVAIESDSKWLGSQIWPSAEIKSKVIERDPIGTGRKDSCGCEVQGSVECVRFHIAQKRAKVKLELGVAFYLWNLHKTGEDVRRLWTEDDEKKFKDVRRGYQNRNTPDDIDSDDDESEYGPLKNAFGHQTHKSRNITLLSPKKPKKTEHSK 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02870 545 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 491 - -
Aip04g02870 545 SMART bright_3 2 66 IPR001606 GO:0003677
Aip04g02870 545 SUPERFAMILY ARID-like 3 73 IPR036431 GO:0003677
Aip04g02870 545 MobiDBLite consensus disorder prediction 491 545 - -
Aip04g02870 545 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1 492 541 - -
Aip04g02870 545 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 492 541 - -
Aip04g02870 545 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1 1 491 - -
Aip04g02870 545 CDD ARID 4 61 - -
Aip04g02870 545 Pfam ARID/BRIGHT DNA binding domain 4 60 IPR001606 GO:0003677
Aip04g02870 545 SMART ELM2_2 381 431 IPR000949 -
Aip04g02870 545 Gene3D - 1 73 IPR036431 GO:0003677
Aip04g02870 545 ProSiteProfiles ARID domain profile. 1 65 IPR001606 GO:0003677
Aip04g02870 545 MobiDBLite consensus disorder prediction 193 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02870 Aip-Chr4 120191455 120194895 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Aip04g02870 ARID 8.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02870 - - adu:107485899 990.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02870 04 120191455 120194895 Aip02g00089 02 1579351 1582349 PCT