Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02866 ATGCAATCTGCCGGCAGCGGTGGCTCGGGCCGGAACCCCTCGGCTGGCCGGGCGGCTTCGGCATCGCCGTCGTCGTCTTCCCAATTTAGCCTGGACTCATTGCATCAGCAACAGCAGCAGCAGCAGAAGATAGGTTCTAGGCAGTCATTTCCACATCAATTGCTAAAAAAACCAGAAGGAAGTGAAGCATTTTTTGCATATCAAACAGGGCTTCAAGGTGGATTTGGGACTAACAATTTCTCACCTTCTAATGCCATGCCTCAGCAGCCTCAAAAATTTGTTGATTTAGGTCAGCAGAGCTCCAGCCAGGGACAAGTTGCTGACCGGCAAATGCTCAATTACCAACAAGCATACCTTCAATATGCTCTGCAGGCTCAACAAAAATCTGCTTTGGCAATGCAGTCACAGAAACAATCTAAAATGGGGATCCCAGGCCCTTCATCTGTGAATGATCAGGACATGCATACTGGAAATCTGAAAATACAGGACCTTATGTCTATGCAAGCTGTTAATCAATCCCAAGCATCGTCCTCTAGGAATTCATCTGAACATTTTGCTCATGGGGAAAAGCAGATGGAGCAAGGACAGCAGCTAGCACTTGATCAGAAGAGTGAAGGAAAGCCTTCATCCCAAGGACCAGCCACTGGACACTTAATGCCGGGAAATAGTATGAGGCCACCTGTGCAAGCACCACCAATGCAGCAGAGCATGCTAAATATGTTGAAGGATCCATTACCATTTACTAAGACTGCTCAATATCAGGCTATGCAGGCATGGGCAAGAAATTTATCTGATCCTTCAAGATGTCTTAAGATGGCTCAGCTCATTCCGCAGATGCAATCAAGAACAGTTCCACAACCAAAGGCAAATGATACTAATGTTGGTACTCAGTCATTACCAGTCAGTGTTTCAAACCCACAGGCTAGTTCTCCAACAGTTGCAAGTGAGAACACAACACATACTAATTCATCTAATGATGCTTCTGCACAATCAAGTTCTGCTAAAGCAAAGCAGACAGGTCTATCTAACCATTTTGGCCCACCAATTAATGCCAGTATTGCTGGAAATTCCAGTGAAGTTGCATTGGCACAATTCAATCTTCATGGCAGAGACTCGCAAGGTTCTTTGAGGCAATCAGCAGTTAAAAATGGAATGTCTTCTATGCATCCGCAGCATTCTTCTGTAAGCTTAAACCTAGGTGCAGATCATCCTTTGAATGCAAAAACTTCATCATCTAGTTCAGAACCTGTGCAGATGCAGCACATCAGGCAATCAAATCAATCTGTTGTTCAGGATGGAGGTCTGTCAAACGAAGGGGGTTCTATAAATCATTCAAAATATCAAGGGGCACCATCTCAGATGCCTCAACAAAGAACTGCATTTACGAAACAACAGCTTCATGTTCTTAAAGCTCAGATACTTGCATTTAGACGACTGAAGAAAGGAGAAGGAACTCTTCCCCAAGAACTTCTTCGGGCCATCAGTCCACCACCTCTTGATTCACAAGTGCAGCAACCGGTTACTTCTGCAGGAGGGCAAAATCAAGACCAATCAGAAGTAACTGTGGCAGAACAGCCAAAGCAGATGGAGTCCATTGCCAAGGACTCACAATCTATCTCATCTATTAATGCAAAGGGTTCTTCAAAGCAGGAAGTCTTTGCTAGAGATGAGAAATCCACAACAACAATACATGTGCAAGCTATGCCTTTGGTGATAAAAGAACCTGCTGGAAAGGAAGAGCAACAATCTGTTGGTTGCTCTGCTATGTCGGACCAGGAAGGTGAACATGGAATTAGACAAATACCTGTTAGAAATGAGTCGGTGTTAGATAGGGGAAAGGCTATTGCAGCCCAAGCTTCTGTTTCTGAACAATTGCAAAATAATAAAACTGAACAAGCAAGCACTGTTCCGCAGCCAAAGGATGTGGGCCTCACCAGAAAATATCATGGACCACTATTTGATTTTCCTTTCTTCACCAGGAAACACGATTCCTTTGGTTCATCAATGATGCTAAACCATAATAATTTGTCACTGGCATATGATGTGAAAGAGCTTCTTTATGATGAAGGTGTGCAAGTCCTTAACAAGAAAAGGACAGAAAATTTAAAGAAGATTGAGGGTTTACTGGCAGTTAACTTAGATAGGAAAAGAATTAGGCCAGATCTTGTGTTGAAGTTGCAAATTGAAGAAAAAAAGCTTCGCCTTTTAGATCTACAGGCACGTTTAAGGGATGAGATTGATCAACATCAAAAAGAGATAATGGCAATGCCAGATAGGCCATATAGGAAATTTGTTAAGTTGTGCGAACGTCAGCGTATGGAACTTGCTAGACAAGTACAGGCATCACAGAAAGCTTTAAGGGAGAAGCAACTGAAATCTATATTCAATTGGCGCAAGAAGCTTCTTGAAGCACACTGGGGCATTCGTGACGCACGGACTGCTCGCAACCGGGGGGTGGCCAAGTATCACGAGAAGATGTTGAGAGAATTCGCGAAACGTAAGGATGATGACAGGAGCAAAAGGATGGAAGCCTTAAAAAACAATGATGTTGATAGGTACAGGGAGATGTTGCTGGAGCAGCAGATTAGTATCCCGGGTGATGCTGCAGAGAGATATGCTGTTCTTTCAACTTTCTTAACCCAGACTGAAGAATATCTACATAAATTAGGAAGTAAGATAACAGCTGCTAAGAGCCAACAGGAAGTGGAGGAGGCAGCAAAAGCTGCTGCAGCTGCTGCACGATTGCAGGGTCTTTCTGAAGAAGAAGTCAGAGTCGCAGCAACTTGTGCTGGAGAGGAAGTGATGATTAGAAATCAGTTTATAGAGATGAATACTCCTAGAGACAGTTCATCTGTCAACAAGTATTACAGCCTTGCTCATGCTGTGAGTGAAAGGGTTGTAAGACAACCATCCATGTTACGAGCTGGAACATTGAGAGACTATCAAATGGTTGGTTTGCAATGGATGCTTTCTTTGTATAACAACAAATTAAATGGAATATTGGCAGATGAGATGGGTCTTGGTAAAACCGTTCAGGTCATGGCATTAATTGCGTACTTGATGGAATTTAAAGGGAACTATGGCCCACATCTTATAATAGTGCCAAATGCTGTTTTGGTTAACTGGAAGAGTGAGTTGCATACTTGGTTACCATCCGTGTCATGCATTTTTTATGTTGGAACAAAGGATACAAGATCAAAATTATTTTCTCAAGAGGTTATGGCTATGAAATTTAATGTCCTTGTGACTACTTATGAGTTCATCATGTATGACCGGTCAAAGCTTTCAAAAGTTGATTGGAAGTATATCGTAATTGATGAAGCACAGAGAATGAAGGATAGGGATTCAGTTCTAGCACGCGATCTTGACAGATACCGTTGTCAACGACGCTTGCTTCTGACAGGAACACCTTTGCAGAATGATTTGAAGGAACTCTGGTCACTTTTAAATTTACTTCTTCCAGAGGTTTTTGACAATAAGAAAGCCTTCCATGATTGGTTTTCAAAACCATTTCAAAAGGAAGGTCCAAATCAAAATGCAGAGGATGATTGGCTTGAAACAGAAAAGAAAGTCATCATTATCCATCGACTCCATCAGATTCTTGAGCCTTTCATGCTTAGGCGTCGCGTTGAAGATGTTGAAGGCTCTCTACCACCAAAGGTCTCCATAGTTTTACGATGTAAAATGTCAGCTGTCCAGAGTGCCATTTATGACTGGGTTAAATCCACTGGCACCCTTCGTGTTGATCCTGAGGATGAGAGAAGAAAGGTTTTGAAGAATCCACTCTACCAGGCAAAGCCTTATAAAACTTTAAATAACAGATGCATGGAGCTACGCAAAACCTGCAATCATCCAATGCTTAATTACCCATTTTTTGATGAATTTATGGATAGAGACTTTATTGTACAATCTTGTGGGAAGTTGTGGATTTTGGATAGGATCCTTATCAAACTTCAAAGAACTGGACATCGAGTTTTGCTGTTTAGTACCATGACAAAGCTCCTAGACATCTTGGAAGACTATCTGCAATGGCGGAGACTAGTTTACAGGAGAATTGATGGGACAACAAGTTTGGAAGACCGAGAATCAGCAATAATGGACTTCAATAGGCCTGATTCAGACTGTTTCATCTTCTTGCTTAGCATTAGAGCTGCTGGGAGAGGCCTTAATCTTCAGTCTGCTGACACAGTTGTCATTTACGATCCTGATCCAAATCCTAAAAATGAGGAGCAGGCTGTGGCCAGAGCTCATCGGATTGGACAAAAAAGGGAAGTCAAGGTTATCTACATGGAGGCTGTTGTTGACAAGATCTCTAGCCATCAGAAAGAGAACGAATTGAGAAGTGGAGGCCTTGTTGATATGGAGGATGAACTTGCTGGTAAGGATCGATATATGGGATCTATTGAGAGCCTCATAAGGAACAATATTCAACAATATAAGATAGACATGGCTGACGAGGTCATTAATGCTGGACGTTTTGATCAAAGAACAACACATGAAGAAAGACGTTCAACTTTGGAGACTTTATTACATGACGAGGAAAGATATCAAGAAACTGTTCATAATGTTCCGTCACTACAGGAGGTTAATCGCATGATTGCTAGAAGTGAAGAGGAAGTTGAACTGTTTGATCAAATGGACGAAGAACTGGATTGGAGTGAAGAGATGACACGGCATGATGAGGTGCCTAAATGGCTTCGAACCAGCACAAGAGAAGTGAATGCTGCTATTGCTGCTTTATCTAAAAGACCATCAAAGAACATTTTATTTGGTGGTAGTATGGGCATGGAATCTAGTGAATTGGGTTCTGAAAAGAGAAGAGGACGACCCAAGGGAAAAAAGCATCCTAATTATAAAGAGTTGGAGGATGATGATATAATTGAGTGCTCTGAAGAAAGCTCTGAGGAAAGAAATGGATATTCTGCACATGAAGGGGAGATAGGAAAATTTGAAGATGAAGTACATAGTGGGGGTGATGGAGCTAATCCCATGGAAAAAGATCAAGTCGAACATGGTCCACCTTTTAATGCTGGATATGAACTTCCTCAGTCTTTAGAAAATGCTAAAAATCACACAGTTGAAGAAGCTGGTACGAGAGGATCATCATTAGATAGTCAAATATTGACACATACAGTGACACCATCAGTTTACTCACGGAAATTTGGTTCCCTCTCTGCATTAGATGCCAAGCCAAGTTCCATTTCAAAAAGGGTAGATGAGTTAGAAGAAGGGGAAATTGCAATATCTGGTGGTTCTCACATGGATCATCAACAATGTAGAAGTTGGATTCATGATCGTGATGAAGGTGAGGATGAACAAGTTCTGCAGCAACCCAAGATCAAACGCAAACGTAGTCTACGTGTTCGACACCGTCCTGTCATCGAAAGGCCTGAGGACAAATCTGGCATTGAGATGGTTCCTCTTCAACGTGGAGAATCATCTCTTATTGCAGACAATAAATATGAAGGTCAAACAAGGACTGACCGAGAATCAAAATCATTTGTTGACAACAATGCCAGCAAGCATGATAAGGATGAATCTTCATTGGAAAATAAGAAAAATTTACCTTCAAGGAAAGCAGCTAATTCATTCAAATTACATGGCTCACCTAAGTCTAATCGTATGATCTGTTTGTCTGCTCCTTCAGAGGATGGTGGCGAACACCCTAAAGAAAGTTGGGAAGGAAAGCCTATCAACTCAGCTGGATCTTCAGCTCATGGCTCTAAGATGACCGAAATTATTCAGAGAAGATGCAAAAATGTAATTAGCAAATTCCAAAGGAGAATAGACAAGGAAGGCCAACAAATTGTACCTTTGCTATCAGATTTGTGGAAGAGGATGGAGAATTCTGGGTACACTGGCGGATCAGGGAACAGTTTGTTGGATCTACGAAAGATTGAGCAGCAGATTGATGCATTGGAGTATAATGGAGTAATGGAGCTTGTGTTTGATGTGCAGTTTATGTTGAGGAGTGCGATGCAATTTTATGGATACTCATATGAGGTAAGAACTGAAGCAAGGAAGGTTCATGATCTCTTTTTTGATATCTTGAAAATTGCATTTCCTGATACGGACTTTGCAGAAGCAAAAGGTTCCCTTTCTTTCTCCGGCCAAATTGATTCCAATGCCATAACATCCCCTAGGCAAGGAAATGTTTGCCCAAGCAAGAGGCAAAGGACAATAAATGATGTGGAAACCGATCAATGCCCTGAACAAAAGGCTCCGAACCGTGGTTCCGGGTCTAACGGCGAAAAAGCCAGGAACAAAGGCCATCCATTGCAGAAGGAATTGAGACCTGGAAGCGGTAGTGGTAGTGCCCGGGAGCAATATCAGCAGAATAATTCTTCTGCATTAGTTCATCCAGGTGATCTGGTTGTATGCAAGAAGAAAAGAAATGACAGAGAAAAATTATTGGCGAAGCCTAGGACCACATCCGCCGGTCCTGTTTCACCGCCCAGTATGGGTAAGAATAGAAGTCCCGGGTCAGGTTCGACTCCTAAGGATGCGAGGGTGTTTCAACATACTTCAAATGTGCAAGGGCGGTTTAGCCAGCCATATCAGCTGTCAAATGGGTCTGGTGGGTTGGTTGGCTGGGCAAACCCGGTAAAGCGACTAAGAACAGATTGTGGGAAGAGGAGACCAAGCCATACATAG 6654 0.4238 MQSAGSGGSGRNPSAGRAASASPSSSSQFSLDSLHQQQQQQQKIGSRQSFPHQLLKKPEGSEAFFAYQTGLQGGFGTNNFSPSNAMPQQPQKFVDLGQQSSSQGQVADRQMLNYQQAYLQYALQAQQKSALAMQSQKQSKMGIPGPSSVNDQDMHTGNLKIQDLMSMQAVNQSQASSSRNSSEHFAHGEKQMEQGQQLALDQKSEGKPSSQGPATGHLMPGNSMRPPVQAPPMQQSMLNMLKDPLPFTKTAQYQAMQAWARNLSDPSRCLKMAQLIPQMQSRTVPQPKANDTNVGTQSLPVSVSNPQASSPTVASENTTHTNSSNDASAQSSSAKAKQTGLSNHFGPPINASIAGNSSEVALAQFNLHGRDSQGSLRQSAVKNGMSSMHPQHSSVSLNLGADHPLNAKTSSSSSEPVQMQHIRQSNQSVVQDGGLSNEGGSINHSKYQGAPSQMPQQRTAFTKQQLHVLKAQILAFRRLKKGEGTLPQELLRAISPPPLDSQVQQPVTSAGGQNQDQSEVTVAEQPKQMESIAKDSQSISSINAKGSSKQEVFARDEKSTTTIHVQAMPLVIKEPAGKEEQQSVGCSAMSDQEGEHGIRQIPVRNESVLDRGKAIAAQASVSEQLQNNKTEQASTVPQPKDVGLTRKYHGPLFDFPFFTRKHDSFGSSMMLNHNNLSLAYDVKELLYDEGVQVLNKKRTENLKKIEGLLAVNLDRKRIRPDLVLKLQIEEKKLRLLDLQARLRDEIDQHQKEIMAMPDRPYRKFVKLCERQRMELARQVQASQKALREKQLKSIFNWRKKLLEAHWGIRDARTARNRGVAKYHEKMLREFAKRKDDDRSKRMEALKNNDVDRYREMLLEQQISIPGDAAERYAVLSTFLTQTEEYLHKLGSKITAAKSQQEVEEAAKAAAAAARLQGLSEEEVRVAATCAGEEVMIRNQFIEMNTPRDSSSVNKYYSLAHAVSERVVRQPSMLRAGTLRDYQMVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHTWLPSVSCIFYVGTKDTRSKLFSQEVMAMKFNVLVTTYEFIMYDRSKLSKVDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNKKAFHDWFSKPFQKEGPNQNAEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCKMSAVQSAIYDWVKSTGTLRVDPEDERRKVLKNPLYQAKPYKTLNNRCMELRKTCNHPMLNYPFFDEFMDRDFIVQSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEDYLQWRRLVYRRIDGTTSLEDRESAIMDFNRPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKENELRSGGLVDMEDELAGKDRYMGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRSTLETLLHDEERYQETVHNVPSLQEVNRMIARSEEEVELFDQMDEELDWSEEMTRHDEVPKWLRTSTREVNAAIAALSKRPSKNILFGGSMGMESSELGSEKRRGRPKGKKHPNYKELEDDDIIECSEESSEERNGYSAHEGEIGKFEDEVHSGGDGANPMEKDQVEHGPPFNAGYELPQSLENAKNHTVEEAGTRGSSLDSQILTHTVTPSVYSRKFGSLSALDAKPSSISKRVDELEEGEIAISGGSHMDHQQCRSWIHDRDEGEDEQVLQQPKIKRKRSLRVRHRPVIERPEDKSGIEMVPLQRGESSLIADNKYEGQTRTDRESKSFVDNNASKHDKDESSLENKKNLPSRKAANSFKLHGSPKSNRMICLSAPSEDGGEHPKESWEGKPINSAGSSAHGSKMTEIIQRRCKNVISKFQRRIDKEGQQIVPLLSDLWKRMENSGYTGGSGNSLLDLRKIEQQIDALEYNGVMELVFDVQFMLRSAMQFYGYSYEVRTEARKVHDLFFDILKIAFPDTDFAEAKGSLSFSGQIDSNAITSPRQGNVCPSKRQRTINDVETDQCPEQKAPNRGSGSNGEKARNKGHPLQKELRPGSGSGSAREQYQQNNSSALVHPGDLVVCKKKRNDREKLLAKPRTTSAGPVSPPSMGKNRSPGSGSTPKDARVFQHTSNVQGRFSQPYQLSNGSGGLVGWANPVKRLRTDCGKRRPSHT 2217
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02866 2217 PANTHER SNF2/RAD54 HELICASE FAMILY 28 2137 - -
Aip04g02866 2217 MobiDBLite consensus disorder prediction 1590 1681 - -
Aip04g02866 2217 MobiDBLite consensus disorder prediction 2067 2083 - -
Aip04g02866 2217 Pfam SNF2-related domain 981 1286 IPR000330 GO:0005524|GO:0140658
Aip04g02866 2217 Gene3D - 1909 2038 IPR036427 GO:0005515
Aip04g02866 2217 MobiDBLite consensus disorder prediction 1 57 - -
Aip04g02866 2217 Pfam Helicase conserved C-terminal domain 1309 1420 IPR001650 -
Aip04g02866 2217 MobiDBLite consensus disorder prediction 2037 2059 - -
Aip04g02866 2217 MobiDBLite consensus disorder prediction 195 217 - -
Aip04g02866 2217 MobiDBLite consensus disorder prediction 1791 1805 - -
Aip04g02866 2217 CDD SF2_C_SNF 1305 1430 - -
Aip04g02866 2217 Gene3D - 969 1217 IPR038718 -
Aip04g02866 2217 SMART helicmild6 1336 1420 IPR001650 -
Aip04g02866 2217 MobiDBLite consensus disorder prediction 1632 1666 - -
Aip04g02866 2217 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 990 1155 IPR014001 -
Aip04g02866 2217 MobiDBLite consensus disorder prediction 1822 1853 - -
Aip04g02866 2217 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1310 1487 IPR001650 -
Aip04g02866 2217 MobiDBLite consensus disorder prediction 135 154 - -
Aip04g02866 2217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1212 1550 IPR027417 -
Aip04g02866 2217 SMART bromo_6 1911 2022 IPR001487 GO:0005515
Aip04g02866 2217 Coils Coil 1526 1546 - -
Aip04g02866 2217 MobiDBLite consensus disorder prediction 1765 1779 - -
Aip04g02866 2217 Gene3D - 1218 1429 IPR027417 -
Aip04g02866 2217 Coils Coil 728 752 - -
Aip04g02866 2217 MobiDBLite consensus disorder prediction 2104 2119 - -
Aip04g02866 2217 MobiDBLite consensus disorder prediction 498 548 - -
Aip04g02866 2217 PANTHER ATP-DEPENDENT HELICASE BRM 28 2137 IPR031056 GO:0006338|GO:0006355|GO:0008094|GO:0040029
Aip04g02866 2217 SUPERFAMILY Bromodomain 1961 2020 IPR036427 GO:0005515
Aip04g02866 2217 MobiDBLite consensus disorder prediction 371 395 - -
Aip04g02866 2217 MobiDBLite consensus disorder prediction 494 557 - -
Aip04g02866 2217 MobiDBLite consensus disorder prediction 1765 1909 - -
Aip04g02866 2217 MobiDBLite consensus disorder prediction 2037 2199 - -
Aip04g02866 2217 Gene3D - 780 853 - -
Aip04g02866 2217 SMART QLQ_2 459 496 IPR014978 GO:0005524|GO:0005634|GO:0006355
Aip04g02866 2217 MobiDBLite consensus disorder prediction 2124 2140 - -
Aip04g02866 2217 ProSiteProfiles QLQ domain profile. 460 496 IPR014978 GO:0005524|GO:0005634|GO:0006355
Aip04g02866 2217 SMART ultradead3 974 1163 IPR014001 -
Aip04g02866 2217 MobiDBLite consensus disorder prediction 169 231 - -
Aip04g02866 2217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 961 1208 IPR027417 -
Aip04g02866 2217 MobiDBLite consensus disorder prediction 280 350 - -
Aip04g02866 2217 MobiDBLite consensus disorder prediction 1 49 - -
Aip04g02866 2217 Pfam QLQ 460 494 IPR014978 GO:0005524|GO:0005634|GO:0006355
Aip04g02866 2217 MobiDBLite consensus disorder prediction 2146 2194 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Aip04g02866 Aip-Chr4 120014846 120025711 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02866 960 1461 RAD5 or RAD16-like Gene Family AT1G02670 25.436 7.28e-28 120
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aip04g02866 SNF2_N 2.1e-66 CL0023
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02866 - - gmx:100811608 3194.06
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02866 04 120014846 120025711 Aip04g02866 04 120014846 120025711 ECH
Aip04g02866 04 120014846 120025711 Aip02g00085 02 1537262 1547194 PCT