Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02801 ATGGCTGTGGTGAATCCTGTGCCTGCAACAACACAAAGGATGGGTTCTGTGAGGCGAGTTCAAGAGGGTGAAATTGTTGAGGAGCCTAATCAAGCTGTGGTAGTTGATGAACCAATCTATGTTGCTGTGTCAAAAGAAGTGAAAGAGAGCAAGCTGAATCTGATATGGGCGATTCAGAACTCTGGAGGAAGGAGGATTTGCATACTTCATGTTCATGTTCCTGCAACCAAGATCCCTTTGATGGGTGCTATGTTCCCTGCAAGTTCACTGAAAGAGCAGGAGGTTCGAGCATACCGGGATATTGAAAGACAAACCATGCATAAGACTCTCGATGAGTATCTTCGTATATGTCAACGGATGGGGGTGCAGGCGGAGAAAGTGCATAATGAACTGGACAACATTGAAAAAGGAATTGTAGAACTTGTCTCCCAACGTGGCATCCAAAGGCTTGTCATGGGAGCGGCATCGGACCGATCCCATTCTAGGAGAATGATGGACTTGAAATCTAAGAAAGCCATCTTTGTATGTGAGCAAGCTCCGGCATTTTGTCGGATACAGTTTATCTGCAAAGGGCACCTTATACACACAAGGGATCGCAGTTTGGGTGCAGATAATTTAGTTGCATCTCCTTTGGTACAACAAGTTCCAAACTCTGAAGCTGAACATCCAGTACTCCCGAGATCTCAATCTGTTCTTACTCCGGGCCAAAATCAAACTAGTCATCGTCGGGAGTTATTTCGCAAAGTAAGGTCTGCCAATGATGGTGTTGTAGGGGGCATTATGCATGATTCTTCTCCAGATAACTTCGAAGGGTTCTCAACTCCACCAAATAGGTTAGGTACTGATTTAAGTTCTGATGAGTCAGATAGGGTATCAAGGACAAGGAGTCCTTCAGCTTTGTCAGTGTGCTCCGATAGTGGTGCTGTTGACCCAATGTTGAGCCCAAATTCGGTTAGTGAGATTGCTGAGAATGTAGCAGAGTTGACTTTGAGCCATGCAATCAAAGAGGATCTTCATCATTCTTCTCCTCCTAGTGTACTGCAGGATGGAGGAATGAATGATACTATATATGATCAACTTGAATTGGCTATGGCTGAGGCCGAGAGAGCCACACGAAACGCATATCAAGAAACATATAGGCGTGGGAAAGCTGAAAAGGAGGCCATTGAAGCTATGCGAAAGGCTAAAATCTCTGAAAGTTTATATGTAGAAGAGTTGAATCTGAGGAAAAGGGCCGAGGAAGAACTACAAAAAGAAAAAGAACAACTTCAAAATATGAAGATCCAGAGAGACAAAGTTGAGGAAGAACTCCAACTTGCACTGGATCAGAAGTCATCACTGGAGAGCCAAATTGCATCATCCGAACTTATGATAAAGGAGTATGAGCAGAAGATCATTTCTGCCGTGGATCTGTTACAAAGCTACAAGAACGAACGGGATGAGTTGCAGGTACAGCGTGATGAAGTGCTGAGAGAGGCCACGGAGTTGAGGAAAAAACAAGGAGAGGCCTCTGGCACTCACACACCTCAATTGTTCTCGGAGTTCTCTTTCCTTGAGATCGAACAAGCAACAAATAACTTTGATCAGTCCCTAAAGATAGGAGAAGGTGGATATGGAAGTATATTTAAAGGTATGTTGCGGCACACTGAGGTGGCTATAAAGATGTTGCACTCTGACAGCATGCAAGGACCCTTGGAGTTTCAACAAGAGGTTGATGTATTGAGCAAGTTAAGGCATCCAAATCTTATCACACTTGTTGGAGCCTGCCCAGAATCCTTTACTCTTATCTACGAGTATTTACCGAATGGGAGCCTTGAAGACCGTCTGGTTTGCAAGGATAACACACCTCCCTTGCCATGGCAAACTCGAATTCGCATTGCTGCAGAACTTTGTTCAGCTCTCATCTTCCTTCACTCAAGTAAACCGCACCGCATAGTGCACGGTGACTTGAAACCCTCTAACATTCTCCTTGATGCAAACCTTATTAGCAAGCTAAGCGACTTTGGAATCTGCCGCATATTATCTCGTCGCGAGGATTCGACTGATAACACTACAGAGTGTTGGAGAACCCACCCAAAGGGAACTTTTGTTTACATGGATCCGGAATTCCTTGCGTCCGGGGAACTTACTCCTAAGTCAGATGTTTATTCCTTTGGAATCATATTGATGAGATTGTTGACAGGGAGACCTGCCTTGGGAATAACAAAGGAAGTGTCCTATGCATTGGAAACCGGAAAGCTGAAATCTCTGTTGGATCCTTTAGCCGGAGACTGGCCATTTGTGCAAGCCGAACAATTGGCTCGCCTGGCCATGAGGTGTTGCGAGATGAATAGAAAGAACCGGCCGGATCTTTATTCCGATGTATGGAGGGTATTGGACCCCATGACAACTTCCTCTGGAGGCACACTAAGTCCTTCAGGGCTTTACCAACAAACACCATCATATTTCATTTGTCCAATCTTTCAGGAAGTAATGCGAGATCCGCATGTAGCTGCCGATGGCTTCACTTATGAAGCCGAGGCCATAAGAGGGTGGCTTGACAGTGGTCATGACGATTCGCCGATGACAAATTTGAAGCTTGCGCACCGCAATCTTGTTCCGAACCGCGCACTCAAGTCTGCAATCCATGACTGGCTTCAAAGTCACTGA 2649 0.453 MAVVNPVPATTQRMGSVRRVQEGEIVEEPNQAVVVDEPIYVAVSKEVKESKLNLIWAIQNSGGRRICILHVHVPATKIPLMGAMFPASSLKEQEVRAYRDIERQTMHKTLDEYLRICQRMGVQAEKVHNELDNIEKGIVELVSQRGIQRLVMGAASDRSHSRRMMDLKSKKAIFVCEQAPAFCRIQFICKGHLIHTRDRSLGADNLVASPLVQQVPNSEAEHPVLPRSQSVLTPGQNQTSHRRELFRKVRSANDGVVGGIMHDSSPDNFEGFSTPPNRLGTDLSSDESDRVSRTRSPSALSVCSDSGAVDPMLSPNSVSEIAENVAELTLSHAIKEDLHHSSPPSVLQDGGMNDTIYDQLELAMAEAERATRNAYQETYRRGKAEKEAIEAMRKAKISESLYVEELNLRKRAEEELQKEKEQLQNMKIQRDKVEEELQLALDQKSSLESQIASSELMIKEYEQKIISAVDLLQSYKNERDELQVQRDEVLREATELRKKQGEASGTHTPQLFSEFSFLEIEQATNNFDQSLKIGEGGYGSIFKGMLRHTEVAIKMLHSDSMQGPLEFQQEVDVLSKLRHPNLITLVGACPESFTLIYEYLPNGSLEDRLVCKDNTPPLPWQTRIRIAAELCSALIFLHSSKPHRIVHGDLKPSNILLDANLISKLSDFGICRILSRREDSTDNTTECWRTHPKGTFVYMDPEFLASGELTPKSDVYSFGIILMRLLTGRPALGITKEVSYALETGKLKSLLDPLAGDWPFVQAEQLARLAMRCCEMNRKNRPDLYSDVWRVLDPMTTSSGGTLSPSGLYQQTPSYFICPIFQEVMRDPHVAADGFTYEAEAIRGWLDSGHDDSPMTNLKLAHRNLVPNRALKSAIHDWLQSH 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02801 882 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 810 882 IPR013083 -
Aip04g02801 882 SMART Ubox_2 815 878 IPR003613 GO:0004842|GO:0016567
Aip04g02801 882 SUPERFAMILY Protein kinase-like (PK-like) 507 784 IPR011009 -
Aip04g02801 882 CDD RING-Ubox_WDSUB1_like 816 857 - -
Aip04g02801 882 CDD STK_N 38 191 - -
Aip04g02801 882 Gene3D HUPs 28 165 IPR014729 -
Aip04g02801 882 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 49 162 - -
Aip04g02801 882 PANTHER OS02G0152300 PROTEIN 31 881 - -
Aip04g02801 882 Pfam U-box domain 813 882 IPR003613 GO:0004842|GO:0016567
Aip04g02801 882 Coils Coil 402 499 - -
Aip04g02801 882 MobiDBLite consensus disorder prediction 259 307 - -
Aip04g02801 882 SMART serkin_6 527 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g02801 882 MobiDBLite consensus disorder prediction 218 243 - -
Aip04g02801 882 Pfam Protein kinase domain 529 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g02801 882 ProSitePatterns Protein kinases ATP-binding region signature. 533 554 IPR017441 GO:0005524
Aip04g02801 882 PANTHER U-BOX KINASE FAMILY PROTEIN 31 881 - -
Aip04g02801 882 MobiDBLite consensus disorder prediction 267 282 - -
Aip04g02801 882 ProSitePatterns Serine/Threonine protein kinases active-site signature. 645 657 IPR008271 GO:0004672|GO:0006468
Aip04g02801 882 Gene3D Phosphorylase Kinase; domain 1 497 599 - -
Aip04g02801 882 ProSiteProfiles U-box domain profile. 811 882 IPR003613 GO:0004842|GO:0016567
Aip04g02801 882 Gene3D Transferase(Phosphotransferase) domain 1 600 801 - -
Aip04g02801 882 Coils Coil 357 377 - -
Aip04g02801 882 SUPERFAMILY RING/U-box 805 881 - -
Aip04g02801 882 ProSiteProfiles Protein kinase domain profile. 527 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02801 Aip-Chr4 119045353 119050598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02801 357 878 U-box Gene Family AT3G49060 45.009 1.53e-143 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Aip04g02801 Pkinase 1.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02801 - - gmx:100807515 1303.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02801 04 119045353 119050598 Aip04g02801 04 119045353 119050598 ECH
Aip02g00076 02 1427886 1432714 Aip04g02801 04 119045353 119050598 ECH