Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02766 ATGATCCCGCCGCAGACGTCGTTGGAAGAGTTGAAGAATGTGATCCTCATGAATACTGGTCTGGTCGGAAAGAAGGACATCACGAAGTTGACTTACAGAATGTCAGTTGCAGTTGCCAACTCGTTTGTGTATCAGAAAATACAGATTAAATTTGACCAACAAGTTTCGATGATGTTTTCTTATCATCGGAGCATTGGAAGTATCTACTCGTTGGAGCTATGCGTGTGTCTCCAGGATGTTGGTGGAAGCTCCTCTAGTTCCAATAATGTGGTGCAACCTGGGAATTTCGGTGCCGCCGATTTGATGCCATTCCAGGAGATTGTTAGAGCTCTGAGAACCTTCAATGCCTTTATGACGCACAGACAAACTGTAGGAAATCGTTGTGCATGTCCTCCCCCTTCTAACCAAGTTGCATCCCCAGAAGGTATTGTTGATGGGTTGGCAGACACTTCTGACGAAGATGAGATCGAAGATGATAGTGGTGAAGAAGCAGAAGTGGTTCCTGAAACCCAACCCGTTTACTGCGAGAGGGATCTTCTGAGTCGTGTCAAATCGGTTGGTGGATCTAGCGGTACTCCAGGCCGCTATCTGTCTTTAAATTTCGGTGCAATGGGTTCGACCACCGTTGAAGACACACCGAGCAACTATGCTTTGTCTggtgagatggagctggaggttggtcttaaatttctcaatagagaaactgctatgcttaccgtaaagaactacaacaatcgtagaagtgcggaatacaaggttgtagagtcggatcaagctagCACACACTCCCTCCCTCGTCCCTCCCATCACCCTCGAGCTGCAACGCCGGCGAGCTCAGTCCCTCCCTTTCGTTTAGCCGTCGAACTGCTCCTGACGCCGTCGCCGGTTAGAGCCTCGAAGCTCACTCAGTCCCTCACTCAGCTAACGTCTCAGACTCTCAGCAGTGGAAGCACGGTCGCCGGGCTCGCCTCCTGCCTCCATAGCGAAGCTCTGTTCTACCTTCGCCGGTGCCATCTCTGTTCCTCCGTCTTGTCCAGTTTTACACAggagctgttgccgccgacggggacagaccgtgggtgctgtcgttgcttgtggaagtcactcgaccggttcaataaccggttcggttctcgcaaccttgGTCCCAGTTCCAATTACAATTCCAGACGATGGTGGTGGTGGTACTGGCCATCACTCTCTCAAAGGCCTTTGCTGATTTCTCCTTGGCGCACTACTCCCTCCATCGCCACCATTGCCACCGCCTTCTCCTCCTCTCAGCAACAAGACAATGGCATCACAACAAGCATTGATTCGTCCTCATCCTCAATAAGCCGGAGTTTCGGAAGACTGAAAACTGAGAAAGTCAAAGCTCTCGTCCACAGCTTCTTCAGTGTCAAGTCCTTCAGGGAACTAGGCTGCGCTGACTACCTCATCCAATCACTCCAAAAGCTCTCTTTCCCGCGCCCTTCCAATGTACAGGCCATGGCATTTGCACCTGTTATTGCTGGAAAGACTTGTAGTATAGCTGACCAAAGTGGTTCTGGAAAGACTTTAGCATATCTTGCACCAATAATTCAGCGTCTTAGGCAAGAAGAACTAGAAGGACATAGTAAATCCACTCCTCAAGCTCCTAGAGTTGTCATACTAGCACCAACAGCTGAATTAGATTCCCAGGTTGTCTTAGATAATTGTCGATCACTGTCTAGATCTGGGGTTCCATTTAAATCTATGGTTGTCACAGGTGGCTTTCGACAAAGAACTCAACTGGAAACTTTACAACAGGGTGTTGATGTATTAATAGCTACACCTGGCCGTTTTTTGTTTCTTATGAAGGAAGGCTTCTTGTATGTTGTTTTGGATGAGGTAGATATTCTCTATGGTGATGAGGATTTCGAAGTGGCTCTTCAAAGCTTGATCAATTCCTCACCCATAACTACACAATACTTATTTGTGACTGCAACTCTACCAAGAGATGTTTACAGCAAACTGGTTGAAATTTTCCCCGATTGTGAAATGATCATGGGACCTAGTATGCACCGAATAAGCCCACGCCTTGAAGAGATCATAGTAGATTGCAGTGGAGAAGATGGGCAAGAAAAAACTACTGATACAGCATTTCTGAACAAGAAATCTGCTCTTCTGCAGCTTGCAGAGGAACGGCCTGTTCCAAGAACTATTGTGTTTTGCAACAAAATTGAAACATGCAGAAAAGTAGAGAATGCATTAAAGCGTATAGATAGAAAGGGAGCAGTTATACAAGTTCTACCTTTCCATGCTGCCATGACACAGGAATCAAGGCTTGCCAGTATGAAGGAGTTTGCACGTTCACCGTCAAAACAAGTGTCCCAGTTTATGGTTTGCACGGACCGGAGGGTTGTTGAGTGCAAAGCATCAAGGGAAATAGACTTTTGGGGAGTGGAGCACGTGATACTGTTCGACTTCCCGAGGGATCCAAGCGAATATGTGAGGCGTGTCGGAAGAACGGCGAGAGGCGCCAAGGGTGTGGGGAAGGCATTCATATTCGTGGTAGGCAAGCAAGTATCGCTTGCACGCAAAATCATGGAAAGAAATAGGAAGGGTCATCCGTTACACGATGTCCCTTCTGCTATTACCTTCTAG 2622 0.4329 MIPPQTSLEELKNVILMNTGLVGKKDITKLTYRMSVAVANSFVYQKIQIKFDQQVSMMFSYHRSIGSIYSLELCVCLQDVGGSSSSSNNVVQPGNFGAADLMPFQEIVRALRTFNAFMTHRQTVGNRCACPPPSNQVASPEGIVDGLADTSDEDEIEDDSGEEAEVVPETQPVYCERDLLSRVKSVGGSSGTPGRYLSLNFGAMGSTTVEDTPSNYALSGEMELEVGLKFLNRETAMLTVKNYNNRRSAEYKVVESDQASTHSLPRPSHHPRAATPASSVPPFRLAVELLLTPSPVRASKLTQSLTQLTSQTLSSGSTVAGLASCLHSEALFYLRRCHLCSSVLSSFTQELLPPTGTDRGCCRCLWKSLDRFNNRFGSRNLGPSSNYNSRRWWWWYWPSLSQRPLLISPWRTTPSIATIATAFSSSQQQDNGITTSIDSSSSSISRSFGRLKTEKVKALVHSFFSVKSFRELGCADYLIQSLQKLSFPRPSNVQAMAFAPVIAGKTCSIADQSGSGKTLAYLAPIIQRLRQEELEGHSKSTPQAPRVVILAPTAELDSQVVLDNCRSLSRSGVPFKSMVVTGGFRQRTQLETLQQGVDVLIATPGRFLFLMKEGFLYVVLDEVDILYGDEDFEVALQSLINSSPITTQYLFVTATLPRDVYSKLVEIFPDCEMIMGPSMHRISPRLEEIIVDCSGEDGQEKTTDTAFLNKKSALLQLAEERPVPRTIVFCNKIETCRKVENALKRIDRKGAVIQVLPFHAAMTQESRLASMKEFARSPSKQVSQFMVCTDRRVVECKASREIDFWGVEHVILFDFPRDPSEYVRRVGRTARGAKGVGKAFIFVVGKQVSLARKIMERNRKGHPLHDVPSAITF 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02766 873 Gene3D - 448 685 IPR027417 -
Aip04g02766 873 Pfam Helicase conserved C-terminal domain 710 832 IPR001650 -
Aip04g02766 873 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 467 495 IPR014014 GO:0003724
Aip04g02766 873 Gene3D - 699 870 IPR027417 -
Aip04g02766 873 SMART ultradead3 486 689 IPR014001 -
Aip04g02766 873 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 440 869 - -
Aip04g02766 873 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 617 843 IPR027417 -
Aip04g02766 873 Pfam DEAD/DEAH box helicase 492 660 IPR011545 GO:0003676|GO:0005524
Aip04g02766 873 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 462 670 IPR027417 -
Aip04g02766 873 CDD DEADc 478 660 - -
Aip04g02766 873 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 709 873 IPR001650 -
Aip04g02766 873 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 440 869 - -
Aip04g02766 873 SMART helicmild6 737 833 IPR001650 -
Aip04g02766 873 MobiDBLite consensus disorder prediction 252 278 - -
Aip04g02766 873 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 498 674 IPR014001 -
Aip04g02766 873 CDD SF2_C_DEAD 686 843 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02766 Aip-Chr4 117927947 117941829 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02766 467 841 Eukaryotic Initiation Factors Gene Family AT3G13920 25.654 1.95e-20 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02766 K13179 - gmx:100784377 665.996