Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02761 ATGCAATCACGCACCACCACCTTTCTCATCCATAGTAAATCCAAACCCTTCTTCGTTCTCCCCTGTCTTCCATTCTCAACCACCATCCACAACCCCACCATTCAACATGGACAACACCACCACTCCACCACCACCTTCCACAACCGCAACCTTGCCGCCATCATCCACTCCCTCTGTGATGCCCACCGTTTCGATGAAGCCCACAACATCTTCTCCCTCTTCCTCTCCTCCGGCTTCCTCCCTGACCACCGCACCTCCAACGTTCTCCTCTCCCGCCTCCTCCCCTCTCGAACCCCGCACCGAACCTGGGCTTGTGCCCTTTCTTTGATCCAAGCTAACCACGGCTTCGTTCCCTCCATTGTCACCTATCACCGCTTAATGGATCACTTTTGCAGGTTCTGTCAACCCCAACAAGCTCACATACTGTTCTTCGACATGAAGGGTAGAGGGCATTCCCCCAATGTGGTTTCTTATACTACTCTCATTAATGGGTACTGCTTAATTGGTGGAATTGGTGATGCCCGCAAGGTGTTTGATGAAATGCTTGATAGTGGTATTGCGGCAAATTCTTTGACTTATAGTGTTTTAGTCGGCGGGTTTCTTAGGATGAGGGATATAGAAGGAGCAAAGGGAATGATGTGCCAGTTATGGGAGAAGATGAGGGTTGAAAGGGAGGCTTCGATGAAGACGGCAGCCTTCGTGAATCTAGTTGATTCTCTGTGTAGGGGAGGGTTCTTCAATGAATTGTTTAGGATAGCCGAGGAGTTTGCATTAGGGGGCAGTTTGTGTGAGGAGGTTGCATATGGACAGATGATAGATTCACTCTGCAAGGTTGGGAGGTATCATGCGGCTGCTAGGATTGTGTATATAATGAGGAAGAGAGGATTAGTTCCGAGTGTAGCGTCTTATAATTATATTATACATGGGCTTAGCAAGGATGGTGATTGTATGAGAGCTTATCAGTTATTAGAGGAAGCTGAATTCGGATTCTTGCTTTCTGAGCATACCTACAAGGTGTTGGTGGAAGCTCTTTGCCAAGTGCTGGATGTGGACAAGGCAAGGAAAGTTCTTGAACACATGCTAAGTAGGGAAGGCGTCGACAAGACTAGGATTTACAACATCTATTTAAGAGCTCTTTGTACTGTGAATAATCCAACAGAACTCTTGAATGTGCTTGTGCTCATGCTTCAAAGCCAGTGTCATGCAGATGTGATCACACTTAACACAGTTATCAATGGATTTTGCAAGATGGGGAGGATTGATGAAGCTCTAACGGTATTACAGGACATGTTGAGTGGTAAATTTTCCGCTCCCGATGTTGTGACCTTCACTACGATCATTTCTGGTTTATTAGACACTGCAAGAGTTGATGAAGCTGTTGAGTTGCTCCATAAAGTAATGCCTGAAAATGGTGTAAGACCGAGTGTTGCGACATATAATGCTTTTCTCCTAGGCCTATACAAACTGAAGAGGCCAAATGATGCATTGAGGGCCTTCAATAATATGGCAAGTAATGGCATTACTGCAGATAGTACCACTTATACTGTTGTGGTAGATGGTCTATGTGAATCTAACCAAATAGATGAAGCAAAGAATTTTTGGCACAATGTTATATGGCCTTCAGGGATTCATGATAATTTTGTTTATGCAGCAATTCTGAAAGGGTTCTGTCGCACCAATAAATTTAACGAAGCTTGTCATTTTTTATATGAACTGGTAGATTCTGGGGTGTCTCCAAATATATTTAGTTATAATATTGTGATCAATTGTGCTTGCAATCTAGGTTTGAAAAGGGAGGCTTATCAGATTGTTAGAGAGATGAAAAGGAATAAACTCACACCTGATTGTGTGACATGGAGGATTCTTGACAAGTTACATGGCAAAGTGAGGACCCACAATCATTTTGAAGATCGAAATTTGTCAGCACTCTATGACAGAGCTTCACTTGGGGAAACTCAACCGATGAAATGGCCAATGCGACTGAGAGTTGTTCTACATCTTGCAGAAGCTCTGGAATACTGCACGAGCAAAGGACGTGCGCTCTATCATGACCTTAATGCATATAGAGTTCTATTTGACGAGGATGGTAATCCTAGGCTTTCAACTTTTGGCCTTATGAAGAATAGTAGGGATGGGAAAAGTTATAGCACAAATTTAGCATTTACCCCTCCTGAGTATCTCAGAACTGGTAGAGTAACACCAGAAAGTGTAATATATAGCTTTGGAACTCTTTTGCTTGACATTCTCAGTGGGAAGCATATCCCTCCAAGTCATGCTCTTGATTTGATTCGAGACAGAAATCTTCAGATGCTGACGGATTCTTGCTTGGAAGGACAGTTTTCTGATGATGATGGAACCGAGTTGGTGCGCTGGGCATCTCGATGTTTACAGTACGAACCAAGAGAGAGGCCTAATCCGAAGTCATTAGTGGCTGCTTTGGCCCCTCTTCAGAAAGAGACAGAGGTTCCTTCACATGAATTGATGGGTATCCCGCATGGTTCCACTTTAGCTTCATTGTCTCCGCTTGGTGAAGCTTGTTCAAGAAAGGACCTGACTGCCATTCATGAAGTTTTGGAAAAACTTGGCTATAAAGATGATGAGGGAATTGCAAATGAGTTATCTTTCCAGATGTGGACTGATCAAATGCAGGACATGCTAAATTGTAAGAAAAAAGGAGATGCGGCTTTCCGGCAGAAAGATTTTAGACTTGCAATTGAGTTCTATACACAGTTCATTGATGCTGGAACAATGGTTTCTCCGACGGTACATGCGCGCCGCAGTTTATGTTATCTTATGAGCGAAATGCCGCAGGAAGCGCTAGGCGATGCAATGCAAGCGCAAGTGATTTCCCCTTTGTGGCACATTGCATCTTATCTTCAGTATGTTTCATTGGGTGGACTTGGAATGGAGCATGAAGCACAAGTAGCACTCAAAGAGGGAACAACATTGGAAGCCAAAAGGAGTGGACAAAAATAA 2976 0.4388 MQSRTTTFLIHSKSKPFFVLPCLPFSTTIHNPTIQHGQHHHSTTTFHNRNLAAIIHSLCDAHRFDEAHNIFSLFLSSGFLPDHRTSNVLLSRLLPSRTPHRTWACALSLIQANHGFVPSIVTYHRLMDHFCRFCQPQQAHILFFDMKGRGHSPNVVSYTTLINGYCLIGGIGDARKVFDEMLDSGIAANSLTYSVLVGGFLRMRDIEGAKGMMCQLWEKMRVEREASMKTAAFVNLVDSLCRGGFFNELFRIAEEFALGGSLCEEVAYGQMIDSLCKVGRYHAAARIVYIMRKRGLVPSVASYNYIIHGLSKDGDCMRAYQLLEEAEFGFLLSEHTYKVLVEALCQVLDVDKARKVLEHMLSREGVDKTRIYNIYLRALCTVNNPTELLNVLVLMLQSQCHADVITLNTVINGFCKMGRIDEALTVLQDMLSGKFSAPDVVTFTTIISGLLDTARVDEAVELLHKVMPENGVRPSVATYNAFLLGLYKLKRPNDALRAFNNMASNGITADSTTYTVVVDGLCESNQIDEAKNFWHNVIWPSGIHDNFVYAAILKGFCRTNKFNEACHFLYELVDSGVSPNIFSYNIVINCACNLGLKREAYQIVREMKRNKLTPDCVTWRILDKLHGKVRTHNHFEDRNLSALYDRASLGETQPMKWPMRLRVVLHLAEALEYCTSKGRALYHDLNAYRVLFDEDGNPRLSTFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVIYSFGTLLLDILSGKHIPPSHALDLIRDRNLQMLTDSCLEGQFSDDDGTELVRWASRCLQYEPRERPNPKSLVAALAPLQKETEVPSHELMGIPHGSTLASLSPLGEACSRKDLTAIHEVLEKLGYKDDEGIANELSFQMWTDQMQDMLNCKKKGDAAFRQKDFRLAIEFYTQFIDAGTMVSPTVHARRSLCYLMSEMPQEALGDAMQAQVISPLWHIASYLQYVSLGGLGMEHEAQVALKEGTTLEAKRSGQK 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02761 991 Gene3D Transferase(Phosphotransferase) domain 1 645 831 - -
Aip04g02761 991 Pfam Protein tyrosine and serine/threonine kinase 628 812 IPR001245 GO:0004672|GO:0006468
Aip04g02761 991 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 439 474 IPR002885 -
Aip04g02761 991 SUPERFAMILY Protein kinase-like (PK-like) 643 824 IPR011009 -
Aip04g02761 991 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 580 614 IPR002885 -
Aip04g02761 991 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 154 188 IPR002885 -
Aip04g02761 991 SUPERFAMILY TPR-like 884 983 IPR011990 GO:0005515
Aip04g02761 991 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Aip04g02761 991 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 264 298 IPR002885 -
Aip04g02761 991 Gene3D Tetratricopeptide repeat domain 100 213 IPR011990 GO:0005515
Aip04g02761 991 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 363 IPR002885 -
Aip04g02761 991 Pfam PPR repeat 441 465 IPR002885 -
Aip04g02761 991 Pfam PPR repeat 336 363 IPR002885 -
Aip04g02761 991 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 44 641 - -
Aip04g02761 991 Gene3D Tetratricopeptide repeat domain 214 328 IPR011990 GO:0005515
Aip04g02761 991 ProSiteProfiles Protein kinase domain profile. 424 828 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g02761 991 TIGRFAM PPR: pentatricopeptide repeat domain 266 300 IPR002885 -
Aip04g02761 991 TIGRFAM PPR: pentatricopeptide repeat domain 582 616 IPR002885 -
Aip04g02761 991 TIGRFAM PPR: pentatricopeptide repeat domain 478 510 IPR002885 -
Aip04g02761 991 TIGRFAM PPR: pentatricopeptide repeat domain 156 189 IPR002885 -
Aip04g02761 991 TIGRFAM PPR: pentatricopeptide repeat domain 405 439 IPR002885 -
Aip04g02761 991 TIGRFAM PPR: pentatricopeptide repeat domain 548 581 IPR002885 -
Aip04g02761 991 TIGRFAM PPR: pentatricopeptide repeat domain 53 82 IPR002885 -
Aip04g02761 991 TIGRFAM PPR: pentatricopeptide repeat domain 441 475 IPR002885 -
Aip04g02761 991 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 545 579 IPR002885 -
Aip04g02761 991 SMART serkin_6 584 816 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g02761 991 Pfam PPR repeat family 474 522 IPR002885 -
Aip04g02761 991 Pfam PPR repeat family 118 166 IPR002885 -
Aip04g02761 991 Pfam PPR repeat family 266 312 IPR002885 -
Aip04g02761 991 Pfam PPR repeat family 545 593 IPR002885 -
Aip04g02761 991 PANTHER OS07G0674300 PROTEIN 44 641 - -
Aip04g02761 991 SUPERFAMILY Lipovitellin-phosvitin complex, superhelical domain 328 487 IPR011030 -
Aip04g02761 991 Pfam PPR repeat 400 430 IPR002885 -
Aip04g02761 991 Gene3D Tetratricopeptide repeat domain 542 644 IPR011990 GO:0005515
Aip04g02761 991 Gene3D Tetratricopeptide repeat domain 466 541 IPR011990 GO:0005515
Aip04g02761 991 Gene3D Tetratricopeptide repeat domain 329 465 IPR011990 GO:0005515
Aip04g02761 991 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 475 509 IPR002885 -
Aip04g02761 991 Gene3D Tetratricopeptide repeat domain 883 991 IPR011990 GO:0005515
Aip04g02761 991 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 119 153 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02761 Aip-Chr4 117880217 117885304 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02761 139 630 Glycosyltransferase AT1G05670 24.950 6.29e-43 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Aip04g02761 PK_Tyr_Ser-Thr 2.1e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02761 - - aip:107634986 1256.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02761 04 117880217 117885304 Aip04g02761 04 117880217 117885304 ECH