Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02758 ATGGATCATGGGGACCAAATGGCATCTTACTATATGCAGCAGAGAGGAATACCTGGTTCTGGAGCACAGCCCGAGTTTTCGGCCGGAATCCGGTCGCTGTCTAGCCCCAACCTACCATTTCAATCCGGCATTGGCAGTGGTGGATCAATTGGATCCACTATACAGCTAGAATCTTCGGGGATTTCGACCCATGGTGTCAATGTTGGTGCTCCTCCGGGGGTACCGCCTGGGGAACCTGTCAAAAGGAAGAGAGGAAGGCCAAGGAAATATGGGACTGATGGAACTGTGTTGGCTCTTACACCAACTTCGTCGAGTCATCCCGGAACCATGACGACACCAGGCCAGAAACGGGGCCGTGGACGGCCCCCTGGGACTGGGAAGAAACAGCAATTGGCATCACTTGGTGAGATGATTTCTGGTTCGGCTGGGATGGGATTCACTCCTCATGTCATCAACATAGCAAGTGGAGAAGACATTGCAACGAAAATTATGGCATTTTCTCAGCAGGGGTCTAGATTTGTGTTTATTTTGTCTGCCACCGGTGCTGTTTCCACTGTCACACTTCGCCAACCTTCAACTTCAGGTGGCTCAGTCACATATGAGGGGCGTTTCGAGATATTGTGCCTGTCAGGCTCTTACTTGCTTACTGATAATGCTGGATCACGCAATCGAACTGGCGGACTAACTGTTTCCCTTGCTAGTCCTGACGGACGAGTCATTGGCGGAGGAGTTGGGGGAGTGCTCATTGCATCAAGTCCTGTTCAGGTGATAGTTGGAAGCTTTATATGGGGTGGATCAAGAACAAAGAAGAAAAAGGAAAGCTCAGAAGGGGTAGAAGCTGCTATGGAGTCGGACCACCAACCGATTCACAATCCGGTTGCACTAAACAGCATTTCGCCGAATCAAAATCTTACTCAAACCCCATCTTTGAGTCCGTGGCCGGCGTCGCGTCCTTTGGACATGCGTAATTCCCATGTTGACATTGATTTAATGCGTGGGTGA 1002 0.504 MDHGDQMASYYMQQRGIPGSGAQPEFSAGIRSLSSPNLPFQSGIGSGGSIGSTIQLESSGISTHGVNVGAPPGVPPGEPVKRKRGRPRKYGTDGTVLALTPTSSSHPGTMTTPGQKRGRGRPPGTGKKQQLASLGEMISGSAGMGFTPHVINIASGEDIATKIMAFSQQGSRFVFILSATGAVSTVTLRQPSTSGGSVTYEGRFEILCLSGSYLLTDNAGSRNRTGGLTVSLASPDGRVIGGGVGGVLIASSPVQVIVGSFIWGGSRTKKKKESSEGVEAAMESDHQPIHNPVALNSISPNQNLTQTPSLSPWPASRPLDMRNSHVDIDLMRG 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02758 333 CDD DUF296 147 261 IPR005175 -
Aip04g02758 333 MobiDBLite consensus disorder prediction 298 318 - -
Aip04g02758 333 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 26 303 - -
Aip04g02758 333 SMART AT_hook_2 81 93 IPR017956 GO:0003677
Aip04g02758 333 SMART AT_hook_2 116 128 IPR017956 GO:0003677
Aip04g02758 333 ProSiteProfiles PPC domain profile profile. 142 284 IPR005175 -
Aip04g02758 333 Pfam Plants and Prokaryotes Conserved (PCC) domain 148 261 IPR005175 -
Aip04g02758 333 SUPERFAMILY AF0104/ALDC/Ptd012-like 146 264 - -
Aip04g02758 333 MobiDBLite consensus disorder prediction 96 112 - -
Aip04g02758 333 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 26 303 IPR039605 GO:0003680
Aip04g02758 333 MobiDBLite consensus disorder prediction 65 129 - -
Aip04g02758 333 MobiDBLite consensus disorder prediction 298 313 - -
Aip04g02758 333 Gene3D - 148 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02758 Aip-Chr4 117756659 117761283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02758 80 333 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 55.513 5.83e-78 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02758 - - gmx:100814615 485.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02758 04 117756659 117761283 Aip04g02758 04 117756659 117761283 ECH
Aip04g02758 04 117756659 117761283 Aip02g00054 02 1223231 1223680 PCT