Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02756 ATGGGGAGGAGACCTGCTAGGTGTTATCGACAAATTAAAAACAAGCCATACCCCAAGTCACGGTTTTGCCGTGGTGTTCCTGATCCCAAGATCAGGATTTACGATGTGGGTATGAAGAAGAAGGGTGTGGATGAGTTCCCTTTCTGTGTCCACCTTGTTAGTTGGGAGAAGGAAAATGTCTCAAGTGAGGCACTGGAAGCTGCTAGGATTGCCTGCAACAAGTATATGGCAAAGTTTGCCGGAAAGGATGCTTTCCACTTGAGAGTCAGGGTTCATCCATTCCATGTTCTTAGGATCAACAAGATGCTTTCATGTGCTGGAGCCGATAGGCTTCAAACTGGAATGAGAGGTGCATTTGGAAAGCCACAGGGCACATGTGCTAGGGTGGCCATTGGGCAGGTCCTTCTTTCTGTTCGCTGCAAGGACAGCAACAGCCATCATGCACAGGAGGCTCTCCGTCGTGCTAAGTTCAAGGGATTCACCAAGTTTAGCCGAGCTGATTATCTGAAATTCAAGTCAGAGAATAGGATTATGCCCGATGGTGTAAATGCACAGCTCCTTGGGTGCCATGGACCATTGGCTAATCGTCAACCTGGAAGAGCATTTTTGCCGCCCAGTGCAACCGCTTAG 630 0.4873 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKGFTKFSRADYLKFKSENRIMPDGVNAQLLGCHGPLANRQPGRAFLPPSATA 209
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02756 209 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 1 203 - -
Aip04g02756 209 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Aip04g02756 209 Gene3D Ribosomal protein L10e/L16 1 163 IPR036920 GO:0003735|GO:0005840|GO:0006412
Aip04g02756 209 Pfam Ribosomal protein L16p/L10e 12 158 IPR016180 GO:0003735|GO:0005840|GO:0006412
Aip04g02756 209 PANTHER 60S RIBOSOMAL PROTEIN L10 1 203 IPR001197 GO:0003735|GO:0005840|GO:0006412
Aip04g02756 209 CDD Ribosomal_L16_L10e 41 163 IPR016180 GO:0003735|GO:0005840|GO:0006412
Aip04g02756 209 TIGRFAM uL16_euk_arch: ribosomal protein uL16 1 158 IPR001197 GO:0003735|GO:0005840|GO:0006412
Aip04g02756 209 Gene3D - 164 201 - -
Aip04g02756 209 SUPERFAMILY Ribosomal protein L16p/L10e 4 158 IPR036920 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Aip04g02756 Aip-Chr4 117726221 117728105 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02756 1 209 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 80.631 2.46e-129 361
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02756 K02866 - gmx:100305619 408.683