Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02749 ATGAACAACAATAGAGCGAGGTACCCACCTGGGATCGGATTAGGTCGTGGAAATGGTGGTTTCAACACTGGGTTTCAACCAAGGCCACCTCAACAACAGTATGTGCAAAGGCACATGGTTCAGCCGCAGCATCCTCATCAGTACCAGCACTATCAGCAGAATCAGCAACAACATCAACAACAACAGCAGCAACAACAACAACAACAGTGGTTGAGAAGGACCCAATTGGGTGGCGGTGGAAGTAATGACAATAACGTTGTTGAGGAGGTTGAGAAGACCGTACAGTCTGAAGCCGTGGACTCAAGTTCACAAGATTGGAAGGCAAGATTAAAGGTTCCACCGCCTGATACACGCTATAAGACTGAGGATGTAACGGCAACTAAAGGAAATGAATTCGAGGATTACTTTTTGAAGCGTGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAGAGACCTTCACCAATCCAAGAAGAAAGTATTCCAATTGCTCTTACTGGCAGTGACATTCTTGCAAGGGCTAAGAATGGAACAGGCAAAACAGCTGCATTTTGTATTCCTGCATTGGAAAAAATTGATCAAGATAATAATGTTATTCAAGTTGTTATATTGGTCCCAACCAGAGAATTGGCCTTGCAGACTTCTCAAGTGTGTAAAGAACTCGGAAAACATTTGAAAATTCAGGTTATGGTAACAACTGGTGGTACCAGCCTAAAAGATGACATTATGCGATTATATCAACCAGTTCATTTGCTGGTTGGAACTCCAGGAAGAATTTTGGATCTTGCAAAGAAGGGCGTTTGTGTTTTGAAAGATTGCTCTATGCTAGTTATGGATGAGGCTGATAAGCTTCTGTCCCCGGAGTTCCAACCTTCAATAGAGCAGCTGATTCAATTTCTTCCTCCAACCCGTCAAATCCTGATGTTTTCTGCAACATTTCCCGTTACTGTAAAGGACTTCAAAGATAGATATCTTCGAAAGCCATATATCATTAATCTTATGGATGAGCTAACTCTGAAGGGTATTACACAGTATTATGCATTTGTGGAAGAGAGACAGAAAGTCCACTGCCTAAATACTCTTTTCTCTAAGCTTCAAATAAACCAGTCAATCATCTTCTGTAATTCAGTGAATCGGGTTGAACTCCTTGCCAAGAAAATAACAGAACTTGGATATTCTTGTTTCTATATTCATGCCAAGATGTTGCAAGACCACCGTAACAGAGTATTTCACGATTTTCGCAATGGTGCATGCAGGAATCTTGTTTGTACTGATCTTTTTACTAGAGGTATAGACATCCAAGCAGTCAACGTTGTTATTAACTTTGATTTTCCGAAGAACTCAGAAACCTATCTGCACAGGGTTGGTCGTTCAGGAAGGTTTGGACACCTTGGTTTAGCAGTAAACTTGATTACATATGAGGATCGCTTCAATTTATATAGGATTGAACAAGAGCTTGGCACTGAAATAAAACAAATTCCACCACATATTGATCAGGCTATATATTGCCGGTGA 1515 0.4092 MNNNRARYPPGIGLGRGNGGFNTGFQPRPPQQQYVQRHMVQPQHPHQYQHYQQNQQQHQQQQQQQQQQQWLRRTQLGGGGSNDNNVVEEVEKTVQSEAVDSSSQDWKARLKVPPPDTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPPTRQILMFSATFPVTVKDFKDRYLRKPYIINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02749 504 CDD SF2_C_DEAD 342 471 - -
Aip04g02749 504 SMART helicmild6 381 462 IPR001650 -
Aip04g02749 504 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 130 158 IPR014014 GO:0003724
Aip04g02749 504 Pfam Helicase conserved C-terminal domain 356 462 IPR001650 -
Aip04g02749 504 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 6 7 504 - -
Aip04g02749 504 MobiDBLite consensus disorder prediction 1 70 - -
Aip04g02749 504 Coils Coil 48 68 - -
Aip04g02749 504 Pfam DEAD/DEAH box helicase 155 319 IPR011545 GO:0003676|GO:0005524
Aip04g02749 504 MobiDBLite consensus disorder prediction 24 70 - -
Aip04g02749 504 MobiDBLite consensus disorder prediction 92 121 - -
Aip04g02749 504 Gene3D - 335 504 IPR027417 -
Aip04g02749 504 CDD DEADc_DDX6 132 332 - -
Aip04g02749 504 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 161 331 IPR014001 -
Aip04g02749 504 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 341 501 IPR001650 -
Aip04g02749 504 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 7 504 - -
Aip04g02749 504 Gene3D - 83 334 IPR027417 -
Aip04g02749 504 SMART ultradead3 149 345 IPR014001 -
Aip04g02749 504 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 277 285 IPR000629 -
Aip04g02749 504 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 484 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02749 Aip-Chr4 117629075 117634837 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02749 130 501 Eukaryotic Initiation Factors Gene Family AT3G19760 38.235 4.63e-95 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02749 K12614 - rcu:8261850 857.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02749 04 117629075 117634837 Aip04g02749 04 117629075 117634837 ECH