Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02748 ATGGGAAGGAAGCCTTGCTGTGAGAAGAAGGGTTTGAAGAAAGGTCCATGGACTGCTGAAGAAGATGAAATCCTTTCTAACTATATCAAAAACAATGGTGGCCATGGTAGCTGGCGTTCTCTTCCTAAGATCACAGGACTCCTTCGTTGTGGTAAAAGTTGCAGACTTAGGTGGACAAATTATCTTAGACCTGACATTAAAAGGGGTCCCTTTACTTCTGAGGAAGAAAAACTTGTTATACAACTTCATGGCATCCTAGGAAACAGGTGGGCTGCTATTGCTTCTCAGTTACCAGGAAGAACAGATAATGAGATAAAGAATTTATGGAACACACACTTGAAGAAGCGGCTCAAGAACATGGGAATCGATCCGAAAACACACGAGCCGGTTGCCTCGCCACATTACCCCCTCGACAAGGCACACTCCTCGTCGATTTCCACGCGCCATATGGCTCAGTGGGAGAGTGCAAGGCTTGAAGCAGAGGCAAGGCTCTCAACAGAATCATCAAAATTTAACAAGAATAATCCTTCTTCGCTCGGCGAAGGCAAAAGTACTAATGAATCCGATTACTTCCTCCGGATTTGGAACTCGGAAGTAGGCGAGGCGTTTCGCAGTGTTGGTAAATCGGAAAACAAAGGTGGATGCTGCGACTGCAGAATTGGCCTTAAACCAGTTAGGTACCTCAAACAATGGAATTGGAGGGAATCATGTGAAGGAAGAGTTAGTGTTATGTGCTGA 738 0.4526 MGRKPCCEKKGLKKGPWTAEEDEILSNYIKNNGGHGSWRSLPKITGLLRCGKSCRLRWTNYLRPDIKRGPFTSEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLKNMGIDPKTHEPVASPHYPLDKAHSSSISTRHMAQWESARLEAEARLSTESSKFNKNNPSSLGEGKSTNESDYFLRIWNSEVGEAFRSVGKSENKGGCCDCRIGLKPVRYLKQWNWRESCEGRVSVMC 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02748 245 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Aip04g02748 245 CDD SANT 16 62 IPR001005 -
Aip04g02748 245 PANTHER TRANSCRIPTION FACTOR MYB104-RELATED 1 211 - -
Aip04g02748 245 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Aip04g02748 245 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Aip04g02748 245 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Aip04g02748 245 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Aip04g02748 245 SMART sant 67 115 IPR001005 -
Aip04g02748 245 SMART sant 13 64 IPR001005 -
Aip04g02748 245 Gene3D - 11 68 - -
Aip04g02748 245 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Aip04g02748 245 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Aip04g02748 245 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 211 - -
Aip04g02748 245 MobiDBLite consensus disorder prediction 164 184 - -
Aip04g02748 245 MobiDBLite consensus disorder prediction 122 141 - -
Aip04g02748 245 MobiDBLite consensus disorder prediction 167 184 - -
Aip04g02748 245 CDD SANT 70 113 IPR001005 -
Aip04g02748 245 Gene3D - 70 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02748 Aip-Chr4 117619313 117622628 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02748 1 207 MYB Transcription Factor Family AT3G61250 73.430 1.01e-107 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip04g02748 Myb_DNA-binding 1.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02748 K09422 - gmx:100816569 358.607