Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02746 ATGGCAGGCATCCCAACAAGCATTGATTCGTCCTCATCCTCAATAAGCCCGAGTTTCGAAAGACTGAAAACTCAGAAAGTCAAAGCTCTCGTCCACAGGTCTAAGCAGCACAGAAACAGAAGCACTGACAATGGTCGACCACGTGATTCATCGCCAAACCCTCGTTCAAGAGGAGGATGGGGGGACGCTGGAGGATCCTTCCGTTCTCTTAATTCTCAGGAGCTTGCTCCCGACACCAACTTCTTCAGTGTCAAGTCCTTCAGGGAACTAGGCTGCGCTGACTACCTCATCCAATCACTCCAAAAGCTCTCTTTCCCGCGCCCTTCCAATGTACAGGCCATGGCATTTGCACCTGTTATTGCTGGAAAGACTTGTATTATAGCTGACCAAAGTGGTTCTGGAAAGACTTTAGCATATCTTGCACCAATAATTCAGCGTCTTCGGCAAGAAGAACTAGAAGGACACAGTAAATCCTCTCCTCAAGCTCCTAGAGTTGTCATACTAGCACCAACAGCTGAATTAGCTTCCCAGGTTGTCTTAGATAATTGTCGATCACTGTCTAGATCTGGGGTTCCATTTAAATCTATGGTTGTCACAGGTGGCTTTCGACAAAGAACTCAACTGGAAACTTTACAACAGGGTGTTGATGTATTAATAGCTACACCTGGCCGTTTTTTGTTCCTTATGAAGGAAGGCTTCTTGCAGTTAACAAATCTAAGATGTGTTGTTTTGGATGAGGTAGATATTCTCTTTGGTGATGAGGATTTCGAAGTGGCTCTTCAAAGCTTGATCAATTCCTCACCCATAACTACACAATACTTGTTTGTGACTGCAACTCTACCAAGAGATGTTTACAGCAAACTGGTTGAAATTTTCCCCGATTGTGAAATGATCATGGGACCTAGTATGCACCGAATAAGCCCACGCCTTGAAGAGATCATAGTAGATTGCAGTGGAGAAGATGGGCAAGAAAAAACTACTGATACAGCATTTCTGAACAAGAAATCTGCTCTTCTGCAGCTTGCAGAGGAACGGCCTGTTCCAAGAACTATTGTGTTTTGCAACAAAATTGAAACATGCAGAAAAGTAGAGAATGCATTAAAGCGTATAGATAGAAAGGGAGCAGTTATACAAGTTCTACCTTTCCATGCTGCCATGACACAGGAATCAAGGCTTGCCAGTATGAAGGAGTTTGCACGTTCACCGTCAAAACAAGTGTCCCAGTTTATGGTTTGCACTGACCGAGCATCAAGGGGAATAGACTTTTGGGGAGTGGAGCACGTGATACTGTTTGACTTCCCGAGGGATCCAAGCGAATATGTGAGGCGTGTCGGAAGAACGGCGAGAGGCGCAAAGGGTGTGGGGAAGGCATTCATATTCGTGGTAGGCAAGCAAGTATCGCTTGCACGCAAAATCATGGAAAGAAATAGGAAGGGTCACCCGTTACATGATGTCCCTTCTGCTGTTACCTTCTAG 1476 0.4512 MAGIPTSIDSSSSSISPSFERLKTQKVKALVHRSKQHRNRSTDNGRPRDSSPNPRSRGGWGDAGGSFRSLNSQELAPDTNFFSVKSFRELGCADYLIQSLQKLSFPRPSNVQAMAFAPVIAGKTCIIADQSGSGKTLAYLAPIIQRLRQEELEGHSKSSPQAPRVVILAPTAELASQVVLDNCRSLSRSGVPFKSMVVTGGFRQRTQLETLQQGVDVLIATPGRFLFLMKEGFLQLTNLRCVVLDEVDILFGDEDFEVALQSLINSSPITTQYLFVTATLPRDVYSKLVEIFPDCEMIMGPSMHRISPRLEEIIVDCSGEDGQEKTTDTAFLNKKSALLQLAEERPVPRTIVFCNKIETCRKVENALKRIDRKGAVIQVLPFHAAMTQESRLASMKEFARSPSKQVSQFMVCTDRASRGIDFWGVEHVILFDFPRDPSEYVRRVGRTARGAKGVGKAFIFVVGKQVSLARKIMERNRKGHPLHDVPSAVTF 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02746 491 SMART helicmild6 361 451 IPR001650 -
Aip04g02746 491 Gene3D - 67 298 IPR027417 -
Aip04g02746 491 SMART ultradead3 104 313 IPR014001 -
Aip04g02746 491 CDD DEADc 96 284 - -
Aip04g02746 491 MobiDBLite consensus disorder prediction 1 69 - -
Aip04g02746 491 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 120 462 IPR027417 -
Aip04g02746 491 Pfam DEAD/DEAH box helicase 110 284 IPR011545 GO:0003676|GO:0005524
Aip04g02746 491 Gene3D - 307 483 IPR027417 -
Aip04g02746 491 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 85 113 IPR014014 GO:0003724
Aip04g02746 491 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 10 488 - -
Aip04g02746 491 Pfam Helicase conserved C-terminal domain 334 450 IPR001650 -
Aip04g02746 491 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 10 488 - -
Aip04g02746 491 MobiDBLite consensus disorder prediction 1 21 - -
Aip04g02746 491 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 116 298 IPR014001 -
Aip04g02746 491 CDD SF2_C_DEAD 310 461 - -
Aip04g02746 491 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 333 491 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02746 Aip-Chr4 117597019 117601074 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02746 85 459 Eukaryotic Initiation Factors Gene Family AT3G13920 27.394 3.27e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02746 K13179 - gmx:100784377 717.227