Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02734 ATGTACAGCACCACTCTCATCCCTGCTTCTAGTTCTGGTCTTGCTTTCGCCTCACCGATTCAGAGAACCCACCGAAAGCAGCACCACCATGTTCGTTGGCATTGCTCGTCGCTTTCTGCTGCAAGCGGCACCGCTACTCAAGTCTCAACCGTTCCATGGGGCTGCGATAGTGATTCCTTGGAGAACGCATCGGCGTTGCAGAAGTGGCTGTCAGAGTCAGGGCTTCCACCGCAGAAGATGAGCATACAGAGAGTTGAGGTCGGAGAGAGGGGCCTAGTTGCCTCAAAGAATATAAGGAAAGGAGAGAAGCTCCTCTTCGTCCCTCCCACGCTCGTTATCACCGAAGATTCCGAGTGGACCTGCCCCGAAGCTGGTGCAATTTTGAAAAAGAATTCGGTGCCGGATTGGCCATTGCTTGCAACTTATCTCATAAGTGAAGCCAGCTTCATGAAATCTTCAAGATGGAGTAACTATATATCAGCCCTACCTCGCCAGCCTTATTCACTTCTTTACTGGTCACAAGCAGAACTAGATCGCTATTTGGAAGCTTCACAAATTAGGGAGAGAGCAGTTGACAGGATTAATAATGTCATTGGAACATACAATGATTTGAGGCTCAGAATATTTTCCAAACACCCCGATTTGTTCCCTGAAGAGTTGTTCAACATTGAGTCCTTCAAATGGTCATTTGGCATTCTCTTTTCTCGTTTGGTTCGGTTACCCTCAATGGACGGAAGGGTTGCCTTGGTTCCTTGGGCAGATATGTTGAATCATAGTTGTGAAGTGGATACCTTTTTGGATTATGATAATTTATCAAAGGGAATTGTCTTTACTACAGATCGGCCGTATCAACCAGGTGAGCAGGTGTTCATTTCATATGGAAAAAAATCAAATGGGGAGCTTCTATTATCGTATGGATTTGTTCCAAGGGAAGGCGCCAATCCTTGTGATTCAGTTGAGTTGTCAGTGTCACTCAAGAAATCTTATCAATCCTACAAGGAGAAATTAGAACTCTTGAAGAAGTATGGATTATCAGGATCTCAATGTTTTCCAATACAGATTACTGGTTGGCCATTGGAGTTAATGGCTTATGCTTATTTAGCTGTTAGTCCTTCAAGCATGAGAGCGCAATTTGAAGAGATGGCTGCGGCAGCATCGAATAAAACTACCATCAAGAAAGATTCAAGATATCCTGAAATAGAGGAGCAAGCATTGCAGTTCATACTTGACAGTTGTGAATCCAGTATATCGAAATACAACAATTTCTTACAGGCAGAAAACCTTTTGATGCCTTCATCTCTTACTTTTAGAATGGTCATAGCTTTTAAGAACGTTGTGTTTTAA 1344 0.4353 MYSTTLIPASSSGLAFASPIQRTHRKQHHHVRWHCSSLSAASGTATQVSTVPWGCDSDSLENASALQKWLSESGLPPQKMSIQRVEVGERGLVASKNIRKGEKLLFVPPTLVITEDSEWTCPEAGAILKKNSVPDWPLLATYLISEASFMKSSRWSNYISALPRQPYSLLYWSQAELDRYLEASQIRERAVDRINNVIGTYNDLRLRIFSKHPDLFPEELFNIESFKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSCEVDTFLDYDNLSKGIVFTTDRPYQPGEQVFISYGKKSNGELLLSYGFVPREGANPCDSVELSVSLKKSYQSYKEKLELLKKYGLSGSQCFPIQITGWPLELMAYAYLAVSPSSMRAQFEEMAAAASNKTTIKKDSRYPEIEEQALQFILDSCESSISKYNNFLQAENLLMPSSLTFRMVIAFKNVVF 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02734 447 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 23 288 - -
Aip04g02734 447 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 324 442 IPR036464 -
Aip04g02734 447 ProSiteProfiles SET domain profile. 78 294 IPR001214 GO:0005515
Aip04g02734 447 SUPERFAMILY SET domain 62 310 IPR046341 -
Aip04g02734 447 SMART set_7 78 300 IPR001214 GO:0005515
Aip04g02734 447 Gene3D set domain protein methyltransferase, domain 1 15 307 - -
Aip04g02734 447 Pfam SET domain 90 294 IPR001214 GO:0005515
Aip04g02734 447 PANTHER - 23 288 - -
Aip04g02734 447 Gene3D - 313 444 IPR036464 -
Aip04g02734 447 Pfam Rubisco LSMT substrate-binding 331 432 IPR015353 -
Aip04g02734 447 CDD SET_RBCMT 77 308 IPR044431 GO:0016279|GO:0018022
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02734 Aip-Chr4 117031470 117036201 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Aip04g02734 SET 2.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02734 - - gmx:100803319 687.567