Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02727 atgctacgtgagaatgagattcctaaatttttatgggctgaagctgtgaacacagcatgttatattttgaatagaacaatcattagaaaaggattaaagaaaatcccttatgagctatggaaaggaacccctccaaatcttaagtactttcatgtttttagatgcaaatgctttgtacttaacaataagaaaaaccttggaaagtttgatccaaaatcctatgaaggaatgtttgttggatattccaccacaagcaaggcctatagagtttatctcaaggagtatagaactatagaggaattcatacatgttactttttgtgattctaacttaattcccagtactgtgatagataatgattcagatggtgaagaagctggagcaagcaaagaaaatcccaaatctattcaacatgaggaatctgtcagcccagttttgtctcgtcagattggaggagacattcccattttgtctcctgagcaggcacgagaaactgaaacagtgagaccaccagaagttcatcaaagctcagcacctgtccaaaagcctagagaatggaagtctatgaggggttatcctcatgacttcgtcattggtgacccctctcaaggtgtaacaacaagatcctccaccaaaaggcaaaccgaacctagcaactttgctctcttgtcacaaatggagcccaacaatgtcaaacaagctcttgaagatccatcttgggtcaaggccatgcaagaggagcttgctcaatttgacaagaatgaggtttggacactagtacctcatccggatggtaagaaggtaacgggtactaagtgggtttttaaaaataaacttggtgaggatggacaagttgttcgtaacaaggctagattagtggcccaaggttacgatcaagaagaagAGGTTCCGAATTCGCCTCCCCTTCCCTCCCCTCGCAGCACCACAGTAGCTATGGCCCCCAAAAGAGGTGTTAAAGCTCCGGTTCCAGCTGCCAAGAAGAAACCCGAGAAGGTTACGAATCCGCTGTTTGAGAAGCGGCCTAAGCAGTTTGGGATCGGTGGGGCGTTGCCGCCGAAGAGGGACCTGACGCGGTTCGTGAAGTGGCCGAAGACTGTTCAAATCCAAAGGAAGAAGAGAATCCTCAAGCAGAGGTTGAAGGTCCCTCCAGCTTTGAACCAGTTCACCAAAACCCTTGACAAGAACCTTGCAACAAGCCTGTTCAAGATACTACTCAAGTATAGGCCTGAGGATAAAGCAGAGAAGAAGGAGCGGCTTTTGAAAAGGGCTCAGGCTGAAACTGAGGGAAAAACTGTTGAGGCCAAGAAGCCAATTGTTGTGAAGTATGGCCTCAATCATGTTACCTACCTTATTGAGCAGAACAAAGCACAGCTGGTTGTGATTGCTCATGATGTGGACCCGATTGAATTGGTTGTTTGGCTTCCTGCATTGTGCAGGAAGATGGAAATCCCATACTGCATTGTGAAGGGCAAGGCTCGCTTGGGATCAATTGTTCATAAGAAAACTGCTTCTGTTTTGTGCTTGACAAGCGTTAAGAATGAAGACAAATTGGAGTTCAGCAGAGTCCTTGAGGCTATCAAGGCTAACTTCAATGACAAGTTTGACGAGTACAGGAAGAAGTGGGGTGGCGGTATCATGGGTTCCAAATCCCAAGCCAAAACCAAGGCAAAGGAAAGACTTCTTGCCAAAGAAGCTGCTCAAAGGATGTCTTAG 1734 0.2318 MLRENEIPKFLWAEAVNTACYILNRTIIRKGLKKIPYELWKGTPPNLKYFHVFRCKCFVLNNKKNLGKFDPKSYEGMFVGYSTTSKAYRVYLKEYRTIEEFIHVTFCDSNLIPSTVIDNDSDGEEAGASKENPKSIQHEESVSPVLSRQIGGDIPILSPEQARETETVRPPEVHQSSAPVQKPREWKSMRGYPHDFVIGDPSQGVTTRSSTKRQTEPSNFALLSQMEPNNVKQALEDPSWVKAMQEELAQFDKNEVWTLVPHPDGKKVTGTKWVFKNKLGEDGQVVRNKARLVAQGYDQEEEVPNSPPLPSPRSTTVAMAPKRGVKAPVPAAKKKPEKVTNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKTVQIQRKKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPEDKAEKKERLLKRAQAETEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTSVKNEDKLEFSRVLEAIKANFNDKFDEYRKKWGGGIMGSKSQAKTKAKERLLAKEAAQRMS 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02727 577 MobiDBLite consensus disorder prediction 123 137 - -
Aip04g02727 577 PANTHER BNAA03G47020D PROTEIN 272 575 - -
Aip04g02727 577 Gene3D - 369 552 IPR029064 -
Aip04g02727 577 PRINTS Ribosomal protein L7A family signature 385 404 IPR001921 -
Aip04g02727 577 PRINTS Ribosomal protein L7A family signature 365 382 IPR001921 -
Aip04g02727 577 PRINTS Ribosomal protein L7A family signature 443 463 IPR001921 -
Aip04g02727 577 PRINTS Ribosomal protein L7A family signature 536 556 IPR001921 -
Aip04g02727 577 PRINTS Ribosomal protein L7A family signature 504 528 IPR001921 -
Aip04g02727 577 PRINTS Ribosomal protein L7A family signature 348 365 IPR001921 -
Aip04g02727 577 PRINTS Ribosomal protein L7A family signature 409 422 IPR001921 -
Aip04g02727 577 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 254 300 IPR013103 -
Aip04g02727 577 ProSitePatterns Ribosomal protein L7Ae signature. 485 502 IPR004037 GO:0042254|GO:1990904
Aip04g02727 577 PRINTS Ribosomal protein L7A/RS6 family signature 482 492 IPR018492 -
Aip04g02727 577 PRINTS Ribosomal protein L7A/RS6 family signature 447 461 IPR018492 -
Aip04g02727 577 PRINTS Ribosomal protein L7A/RS6 family signature 466 479 IPR018492 -
Aip04g02727 577 PRINTS Ribosomal protein L7A/RS6 family signature 492 506 IPR018492 -
Aip04g02727 577 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 272 575 - -
Aip04g02727 577 MobiDBLite consensus disorder prediction 117 182 - -
Aip04g02727 577 SUPERFAMILY L30e-like 407 548 IPR029064 -
Aip04g02727 577 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 434 524 IPR004038 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02727 Aip-Chr4 116925299 116939164 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02727 319 577 Cytoplasmic Ribosomal Protein Gene Family AT3G62870 85.328 4.24e-163 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02727 K02936 - gmx:100792324 462.611