LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip04g02706	ATGGGCGTTGGTGGCAATTTCTGGGAGCTACTAAAGCCCTATGCACGGAGCGAAGGGTTTGATTTCTTGAGGAACAAGCGAGTGGCTGTGGACCTCTCTTACTGGATTGTGGCCCACGAGACTGCCTTAAAGGCTCATCATGTTCGCAAACCCCACCTCAGACTCACCTTCTTCCGCACCATCAATCTCTTCTCCAAGTTTGGAGCATTTCCAGTGTTTGTTGTTGATGGAACTCCATCGCCGTTGAAATCAGAGGCACGGATTGCAAGATTTTTCCGGTCTTCTGGCATTGAATTAACTAGCTTGCCGGTGCCTGAAGGAGGTGTCTCAGCTGAAAGGAACAGTGCTTTTACAAAATGTGTTCAAGAATGTGTGGAACTTGTTGAACTACTTGGAATGCCTGTATTAAAGGCTAAAGGAGAGGCCGAAGCACTTTGCGCCCAATTAAATTGTGAAGGTCATGTAGATGCTTGCATCACAGTTGACAGTGATGCATTTCTCTTTGGGGCCAAATGTATAGTAAAATGTTTTCGCCCCAATTCCAAAGAACCCTTTGAGAGCTACAATATGTCAGATATTGAAGCTGGCCTTGGGTTGAAGAGGAAACACTTAATAGCACTTGCTCTTCTGGTTGGAAATGATCATGATATGAATGGTGTGCGAGGGATAGGACTTGATACTGCTCTTCAGTTTGTTCGAGCTTTTAGTGAAGATGATATATTAAATAGATTACATGAGATAGGCAAAGGAAACACTTCTCAAGTTCCCATAAGCATTAAATCTGGGGACTATATGGATACGGATGAGAACTCCCCGAATAAAAAACAAGCCCACTGCTCATTCTGTGGGCATCCTGGCAGCAAAAGGGATCACACGAAGTTTTCCTGTGAATATTGTCTCACTAATGACGAAGAAGGTTGCCTGAGAAAACCGGAGGGTTTCAAATGTGATTGCTTCTCCTGTGATATGAACAGGAAACATAAGGAGCAGAAAAGGCTAGAAATTTGGCACACAAAAGTTTGCGACAAGATTGCAAAGGAACCAGATTTTCCAAAGGATGAAATCATTGATATGTATTTACATAAAGACAATGGTTACTTCTCCGAAAAGGATGGCCCTTGCATGTGTTGGGAAAAACCTAATATTGAGATGCTGATTGATTTCTTAAACTTCCATCAGAACTGGGATCCATCCTACGTTCGGCGGCTGATCTTTCCTGTTATGTCCACCATCTTCTTGAGAGATATCACTACTACTACAGCAGAAGATTTGTTATTTGGACAGTACGAGTTTGATTCCTTGGAACGTGTAAAGACGAGATATGGACATCAGTTTTATGTGGTCAAGTGGAAACGAGCATTCAACAACGTTGCCTATAGAATTCCATCAAATGTACCTGACACGCCACAACAAGGTACTAGAGAGCTGGATGAAACAGAGGATTTACTAGATGATTGTGATGTTCCCGAGGTTCTCATGGATGAGGGATCTAGTTTTCTATTGACAGATGAAAATATGGACCTTGTCGCAGCTGCCTTTCCAAAAGAAGTAAAAAGGTTTTGGCACGAACAGGAACTGAAGGAGTTGAAAAGAAGAAAGAGCCCATCCTCAAGATCAGATAAAAATGAAAATTCAGCATCACCAAGCTCAAAGAGGTTGCAGCTAAACATCACAGAATTCTTCCCTTCAACAAAAGTTAAAGATCAATCGAAAGCAGACGATTCATCCAAGGAAATCAGTGATAGCCAAGATAGTGGAGCCTCCAAAGGAAAGAGGAAAGAATCAAGTTCTAACCTCTCGAAATCCGTGAGGCGCCGCCTTCTATTTGACTAG	1833	0.4255	MGVGGNFWELLKPYARSEGFDFLRNKRVAVDLSYWIVAHETALKAHHVRKPHLRLTFFRTINLFSKFGAFPVFVVDGTPSPLKSEARIARFFRSSGIELTSLPVPEGGVSAERNSAFTKCVQECVELVELLGMPVLKAKGEAEALCAQLNCEGHVDACITVDSDAFLFGAKCIVKCFRPNSKEPFESYNMSDIEAGLGLKRKHLIALALLVGNDHDMNGVRGIGLDTALQFVRAFSEDDILNRLHEIGKGNTSQVPISIKSGDYMDTDENSPNKKQAHCSFCGHPGSKRDHTKFSCEYCLTNDEEGCLRKPEGFKCDCFSCDMNRKHKEQKRLEIWHTKVCDKIAKEPDFPKDEIIDMYLHKDNGYFSEKDGPCMCWEKPNIEMLIDFLNFHQNWDPSYVRRLIFPVMSTIFLRDITTTTAEDLLFGQYEFDSLERVKTRYGHQFYVVKWKRAFNNVAYRIPSNVPDTPQQGTRELDETEDLLDDCDVPEVLMDEGSSFLLTDENMDLVAAAFPKEVKRFWHEQELKELKRRKSPSSRSDKNENSASPSSKRLQLNITEFFPSTKVKDQSKADDSSKEISDSQDSGASKGKRKESSSNLSKSVRRRLLFD	610

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip04g02706	610	SMART	xpgineu	129	199	IPR006086	GO:0004518
	Aip04g02706	610	CDD	PIN_GEN1	2	203	-	-
	Aip04g02706	610	MobiDBLite	consensus disorder prediction	540	565	-	-
	Aip04g02706	610	Gene3D	-	3	198	-	-
	Aip04g02706	610	PANTHER	FLAP ENDONUCLEASE FAMILY MEMBER	1	598	IPR006084	-
	Aip04g02706	610	SUPERFAMILY	PIN domain-like	6	214	IPR029060	-
	Aip04g02706	610	MobiDBLite	consensus disorder prediction	528	610	-	-
	Aip04g02706	610	MobiDBLite	consensus disorder prediction	566	600	-	-
	Aip04g02706	610	PANTHER	FLAP ENDONUCLEASE GEN-LIKE 1	1	598	-	-
	Aip04g02706	610	SMART	xpgn3	1	97	IPR006085	GO:0004518
	Aip04g02706	610	Pfam	XPG I-region	132	214	IPR006086	GO:0004518
	Aip04g02706	610	SUPERFAMILY	5' to 3' exonuclease, C-terminal subdomain	199	414	IPR036279	-
	Aip04g02706	610	Gene3D	-	199	261	-	-
	Aip04g02706	610	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	25	39	IPR006084	-
	Aip04g02706	610	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	71	90	IPR006084	-
	Aip04g02706	610	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	128	145	IPR006084	-
	Aip04g02706	610	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	149	169	IPR006084	-
	Aip04g02706	610	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	204	219	IPR006084	-
	Aip04g02706	610	Pfam	XPG N-terminal domain	1	90	IPR006085	GO:0004518

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip04g02706	1	246	Core DNA Replication Machinery Family	AT5G26680	30.000	4.47e-17	82.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip04g02706	K15338		-	gmx:100791251	912.909

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip04g02706	04	116428702	116432457	Aip04g02706	04	116428702	116432457	ECH