Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02702 ATGATGGGTTCAGGTACCAATTTGGTTACCACGGTCATTGGGTTTGGGATGAGTGCCACTTTCATTGTGTTTGTGTGCACAAGAATCATTTGTGGGAGGATAAGAGGGAGTGTTGAATCTCGCATGATGTATGAGATTGAATCCAGGATTGACGTAGAACAGCCAGAACATCATGCTAATGACCCTGAACCCGAGCCTGTTATGCTTGATGCAATCCCCACTTTGAAGTTCAACCAAGAGGCCTTCAGTGCCATTGAAGATACACAGTGTGTCATATGTTTGGCAGATTACAGAGAAAGAGAAGTGTTACGCATCATGCCGAAATGCGGTCACACATTTCATCTTTCTTGCATTGACATATGGCTGAGGAAACAATCCACTTGCCCGGTATGCCGTCTGCCATTGAAAAACTCGTCCGAGGCGAAACATGTTAGACCTGTTACATTTACCATGAGCCAGCCTCTTGATGAGTCGCACACACCAGAAAGGAATCAAGATAGTGAGAGTCGTGTCGAACCGGCCGCTAGCAACTCCTCACAACCACCACCTCCCGGAGAACCAGAAGCAAGGCAATGA 576 0.4688 MMGSGTNLVTTVIGFGMSATFIVFVCTRIICGRIRGSVESRMMYEIESRIDVEQPEHHANDPEPEPVMLDAIPTLKFNQEAFSAIEDTQCVICLADYREREVLRIMPKCGHTFHLSCIDIWLRKQSTCPVCRLPLKNSSEAKHVRPVTFTMSQPLDESHTPERNQDSESRVEPAASNSSQPPPPGEPEARQ 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02702 191 MobiDBLite consensus disorder prediction 177 191 - -
Aip04g02702 191 PANTHER OS11G0150450 PROTEIN 1 167 - -
Aip04g02702 191 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
Aip04g02702 191 Pfam Ring finger domain 89 132 IPR001841 -
Aip04g02702 191 SUPERFAMILY RING/U-box 79 138 - -
Aip04g02702 191 SMART ring_2 90 131 IPR001841 -
Aip04g02702 191 MobiDBLite consensus disorder prediction 144 191 - -
Aip04g02702 191 PANTHER OS02G0676500 PROTEIN 1 167 - -
Aip04g02702 191 MobiDBLite consensus disorder prediction 144 158 - -
Aip04g02702 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 142 IPR013083 -
Aip04g02702 191 CDD RING-H2_EL5_like 89 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02702 Aip-Chr4 116382119 116384286 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02702 79 135 C3H Transcription Factor Family AT4G10160 56.140 9.90e-20 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02702 - - ccaj:109802319 340.887
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02702 04 116382119 116384286 Aip04g02702 04 116382119 116384286 ECH